PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G178400.1
Common NameB456_002G178400, LOC105785703
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 293aa    MW: 33362.3 Da    PI: 6.6267
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G178400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.54.2e-2265124357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         +R+++t+eql +Leel+++ +r+psa++++++A++l    +++ ++V++WFqN++a+e++
  Gorai.002G178400.1  65 SRWNPTPEQLLTLEELYRRgTRTPSAAQIQQIATRLrrfgKIEGKNVFYWFQNHKARERQ 124
                         7*****************99**************************************97 PP
2Wus_type_Homeobox112.32.6e-3664126365
   Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         ++RW+PtpeQ+  Leely++G+rtP++++iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+
  Gorai.002G178400.1  64 SSRWNPTPEQLLTLEELYRRGTRTPSAAQIQQIATRLRRFGKIEGKNVFYWFQNHKARERQKR 126
                         68***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.33760125IPR001356Homeobox domain
SMARTSM003892.2E-562129IPR001356Homeobox domain
SuperFamilySSF466892.61E-1263129IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-965124IPR009057Homeodomain-like
PfamPF000461.1E-1965124IPR001356Homeobox domain
CDDcd000861.58E-666126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGYPHITDLN LSHSFNIAKP SPLDPNPTNT TNLLALNHGD LASNANEGSH TTELNTQQQQ  60
PLGSSRWNPT PEQLLTLEEL YRRGTRTPSA AQIQQIATRL RRFGKIEGKN VFYWFQNHKA  120
RERQKRRRQL KTEQQQQQQC DTESLEKKES VFSLPIGCCE IKPTNKGSPS NVSKFSEEFI  180
WTHGFAKSEG NEWMEIEEKE LRMELCCTPI DLTNTTITAS LDTQKNLCSF KPHQEKITTL  240
EDENREDQTL ELFPLGSNDG NGINISNKDT QVPIRAISTT PNKYFEFLPL KN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467283.10.0PREDICTED: WUSCHEL-related homeobox 6
TrEMBLA0A0D2Q8520.0A0A0D2Q852_GOSRA; Uncharacterized protein
STRINGGorai.002G178400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1804879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-20WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]