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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.002G171200.1 |
| Common Name | B456_002G171200, LOC105785614 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
BBR-BPC |
| Protein Properties |
Length: 283aa MW: 31752.4 Da PI: 10.0558 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.002G171200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 349.6 | 7.1e-107 | 1 | 282 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverd 78
mddd+ + rn+gyyep+ +k +lglqlmss+aerd+k r+ nl + +++aa+++rd m++ rd+++++ +
Gorai.002G171200.1 1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMAERDTKSfipmRDPNL-MVTHNAAFHPRDcivseapipMNY-VRDSWISQ--------R 79
9***9999*******99..*******************99999*****.************************.9*******........7 PP
GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169
+k++++l+ ++++++l++t+ ++sl l++s+ + e + +e+++ +ke+ + kkrq+++ pk++k+kk++k
Gorai.002G171200.1 80 EKFFNMLP-------GISPNYGILPETSAAHSLPI-----LQPSPNSSTTDE-RVVGR-VEEPPATKESVELKKRQSESAPKTPKTKKPRK 156
89*****9.......345789**********9998.....777777733333.23334.45688888888899999999999999999999 PP
GAGA_bind 170 ksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKm 260
+k++++++ +r+k kks+d+ +ng ++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKm
Gorai.002G171200.1 157 ----PKDNTNSSV--QRVKPAKKSMDIKINGYDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKM 241
....333444444..689************************************************************************* PP
GAGA_bind 261 SqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
Sqgafkk+LekLaae y+++np+DL++hWA+HGtnkfvtir
Gorai.002G171200.1 242 SQGAFKKVLEKLAAENYNFNNPIDLRTHWARHGTNKFVTIR 282
****************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MDDDALNMRN WGYYEPSFKG HLGLQLMSSM AERDTKSFIP MRDPNLMVTH NAAFHPRDCI 60
VSEAPIPMNY VRDSWISQRE KFFNMLPGIS PNYGILPETS AAHSLPILQP SPNSSTTDER 120
VVGRVEEPPA TKESVELKKR QSESAPKTPK TKKPRKPKDN TNSSVQRVKP AKKSMDIKIN 180
GYDMDISGIP IPVCSCTGTP QQCYRWGCGG WQSACCTTNV SMYPLPMSTK RRGARIAGRK 240
MSQGAFKKVL EKLAAENYNF NNPIDLRTHW ARHGTNKFVT IR*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 138 | 152 | KRQSESAPKTPKTKK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
