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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G169100.1 | ||||||||
Common Name | B456_002G169100, LOC105785593 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 565aa MW: 61264 Da PI: 8.7842 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Gorai.002G169100.1 67 FICEVCNKGFQREQNLQLHRRGH 89 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00027 | 143 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Gorai.002G169100.1 143 WKCEKCSKRYAVQSDWKAHSKTC 165 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.07E-7 | 66 | 89 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.3E-6 | 66 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 2.7E-5 | 67 | 89 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 67 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 108 | 138 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-5 | 131 | 164 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.07E-7 | 138 | 163 | No hit | No description |
SMART | SM00355 | 130 | 143 | 163 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MAASSSLGPF GIREEDQHQH STAAPTSAMG PAPPPPQRKK RNQPVLPNPD VEVIALSPKS 60 LMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLRQKTT KEVKRKVYLC PEPTCVHHDP 120 SRALGDLTGI KKHYSRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR 180 RDSFITHRAF CDALAQENAR QPPSFNSIGN HLYGSTSNMS LGLSQVGTQM SSVQDQTSNN 240 SGGRDIFKLG GVARSTQFDH LLLSPSMGSS SFRPQQSMVS SAAFFMPESN QEHHPQQGIL 300 GNNKQYHQGL MMQFPEDIQN NTTNTPSPPS FFNLSFLSNC GNGTNPDANL TSSGLLTPEH 360 FDNETGGGGG GTSEASDPFS NTVMGNQITT NIPSVFAQSN NIAVQMSATA LLQKAAQMGS 420 TSSYKNASLM RSFGNSNFGG TLGDSTGNNL HELMNSIAGG GSNTFSFGHG QENPYANRSS 480 VEQEKHVEQQ PQILNVSGGG GSDRLTRDFL GVGQIVRSMS MGGVSQREQQ QQQEAMGLSA 540 LGSERSNITA PTNHQCLGGN GNFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-35 | 139 | 200 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 7e-35 | 139 | 200 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00255 | DAP | Transfer from AT2G02070 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614588 | 0.0 | JX614588.1 Gossypium hirsutum clone NBRI_GE58088 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012467157.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Swissprot | Q9ZUL3 | 1e-134 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A0D2Q7Q4 | 0.0 | A0A0D2Q7Q4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G169100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4373 | 26 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-131 | indeterminate(ID)-domain 5 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G169100.1 |
Entrez Gene | 105785593 |
Publications ? help Back to Top | |||
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