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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.002G159600.1 |
| Common Name | B456_002G159600, LOC105785480 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
Trihelix |
| Protein Properties |
Length: 528aa MW: 60006 Da PI: 7.6447 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.002G159600.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 96.3 | 2.7e-30 | 112 | 197 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+l+L+e+r+ ++ +++++++k+plW+evs++m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea
Gorai.002G159600.1 112 RWPRQETLTLLEIRSHLDPKFKEANQKGPLWDEVSRVMfEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 197
8*************************************99******************************98..55667*******85 PP
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| 2 | trihelix | 56.2 | 9e-18 | 392 | 475 | 2 | 82 |
trihelix 2 WtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkryk..kikegekkrtsessstcpyf 82
W++ ev L+++r+ me+++++ + + lWee+++km gfers +Ck+kw+ + + y k+ke++kkr +e+s+ + y+
Gorai.002G159600.1 392 WQEAEVSRLLQLRTAMETKFQQvgYSEEVVLWEEIAAKMGCLGFERSGLMCKDKWDTIGGAYTlmKTKESNKKR-KENSRGFDYY 475
*********************9434799**********************************833555556655.6666666666 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0010200 | Biological Process | response to chitin |
| GO:0046621 | Biological Process | negative regulation of organ growth |
| GO:0048442 | Biological Process | sepal development |
| GO:0048498 | Biological Process | establishment of petal orientation |
| GO:0090428 | Biological Process | perianth development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 528 aa
Download sequence Send
to blast |
MEMEDHRHHQ YAIPDLRQLL NGKPINFQAI PQDTELFSPG HHRNLPPSQQ PHHPFDVMQV 60
VGRHEFPSDS TGNTNGTPMA AVATVTSAST LSPSCGFDGE ATAFGGDGGN GRWPRQETLT 120
LLEIRSHLDP KFKEANQKGP LWDEVSRVMF EEHGYQRSGK KCREKFENLY KYYKKTKEGK 180
AGRQDGKHYR FFRQLEALYG DTSNNNGVLG QETPLIGNSF QFHGAQNSIN TQANQEIYHS 240
QKLCSDSLSL SSSSKFDTCS SDNNDLSTAK LKKKRGCRSW KAKIKEFIDS QIGKLMERQE 300
AWLVKLTKTL EEKEQERLLR EEQWRKEAAI RIDREHKFWA KERAWIEARD AALMEALQNL 360
AGKQLKAASS NGENHNENGN GTINHTVKAD GWQEAEVSRL LQLRTAMETK FQQVGYSEEV 420
VLWEEIAAKM GCLGFERSGL MCKDKWDTIG GAYTLMKTKE SNKKRKENSR GFDYYQPNET 480
IFTQGPETLR LQPNDGSSHA VSDSCFRFFM ADGDNNLWEN YGLKLSN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}. |
| Uniprot | TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX577546 | 2e-76 | JX577546.1 Gossypium hirsutum clone NBRI_GE9395 microsatellite sequence. |
