PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G138300.1
Common NameB456_002G138300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 357aa    MW: 38521.9 Da    PI: 4.959
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G138300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16239275135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Gorai.002G138300.1 239 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 275
                         *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.0E-599134IPR010399Tify domain
PROSITE profilePS5132011.80599134IPR010399Tify domain
PfamPF062003.5E-9103133IPR010399Tify domain
PROSITE profilePS5101710.705167210IPR010402CCT domain
PfamPF062035.9E-13167210IPR010402CCT domain
SMARTSM004014.3E-11233286IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.88233292IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-11235285No hitNo description
Gene3DG3DSA:3.30.50.105.7E-15237280IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.37E-16238282No hitNo description
PfamPF003206.9E-14239275IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MKHLIIVTSG LPFSVQLESA AFRCVYMAAA NPQPLQVRPF EEHARGTMQI DDDDGDYADD  60
AMDDVEDANI NSVNVAEHGM GLIGGVIGGG GAAGGGVVRA LRTSELTLSF EGEVYVFPAV  120
TSEKVQAVLL LLGGRDIPTG VPTIEVPFDQ NNMGVADVSK RSNLSRRIAS LVRFREKRKE  180
RCFEKKIRYT VRKEVAQSRM HRKNGQFASV KESTSPSGWD SSQIGFQDGT RPETAIRSCQ  240
HCGVSENNTP AMRRGPAGPR TLCNACGLMW ANKGTLRDLS KGGRNISLEQ SEPETPIEVK  300
PSIVEGDLSA NRDENGNPSK DLTNGSNNAS VSPDEEDLHE SAEDLTNSVY GDSSFF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.1531e-136seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487426971e-136
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016706679.10.0PREDICTED: GATA transcription factor 24-like isoform X1
TrEMBLA0A0D2R5N70.0A0A0D2R5N7_GOSRA; Uncharacterized protein
STRINGGorai.002G138300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-59ZIM-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]