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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G137900.2 | ||||||||
Common Name | B456_002G137900, LOC105785246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 299aa MW: 34307.6 Da PI: 5.1406 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.1 | 8.7e-10 | 135 | 177 | 6 | 53 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 ++ErrRR+r+N+++ Lr+++Pk + K++ +iL +++Y ++ Gorai.002G137900.2 135 LMAERRRRKRLNDRLLMLRSVVPKiS------KMDRTSILGDTIDYTSE 177 589*********************66......**************665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.716 | 129 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-14 | 132 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-7 | 135 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-10 | 135 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-14 | 136 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00161 | 224 | 287 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MEINEEGLFE ELLDVRGENW DTNPTEMSGI FSNGTWNFDD HKPSSTFLPL PFHQDYTYNF 60 NPIYCPFVDE FSSQSNTFDT PSFPLQQQHD DQESRFLVHQ LHKLDVKATC KTEPVQSPHP 120 DNPAKKLERQ PSKNLMAERR RRKRLNDRLL MLRSVVPKIS KMDRTSILGD TIDYTSELLE 180 RIKSLQQEVE AGSNMDHIFK GEKPNEMIVR NTPKFEVERR NGDTRIEICC RGDPGLLLST 240 VSTMEASGLE IQQCVISCFN DFAMHASCSE DLEQTTLMRC EDIKKALFRN AGYGGRCV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 144 | ERRRRKRL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012466677.1 | 0.0 | PREDICTED: transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 8e-70 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A0D2MAL8 | 0.0 | A0A0D2MAL8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G137900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 7e-65 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G137900.2 |
Entrez Gene | 105785246 |