PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G137900.1

Common Name

B456_002G137900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 324aa MW: 37189 Da PI: 5.4467

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G137900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.7	8.9e-08	135	199	6	50
HHHHHHHHHHHHHHHHHHHCTSCC.C......................TTS-STCHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as...................kapskKlsKaeiLekAveY 50 ++ErrRR+r+N+++ Lr+++Pk + + + ++ +iL +++Y Gorai.002G137900.1 135 LMAERRRRKRLNDRLLMLRSVVPKiSKviycknsdfkplitgfishFLSLQQMDRTSILGDTIDY 199 589*********************55477777777777777777764444556666666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.28E-11	124	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.236	129	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-7	135	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-5	135	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-12	136	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00181	249	312	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MEINEEGLFE ELLDVRGENW DTNPTEMSGI FSNGTWNFDD HKPSSTFLPL PFHQDYTYNF 60 NPIYCPFVDE FSSQSNTFDT PSFPLQQQHD DQESRFLVHQ LHKLDVKATC KTEPVQSPHP 120 DNPAKKLERQ PSKNLMAERR RRKRLNDRLL MLRSVVPKIS KVIYCKNSDF KPLITGFISH 180 FLSLQQMDRT SILGDTIDYT SELLERIKSL QQEVEAGSNM DHIFKGEKPN EMIVRNTPKF 240 EVERRNGDTR IEICCRGDPG LLLSTVSTME ASGLEIQQCV ISCFNDFAMH ASCSEDLEQT 300 TLMRCEDIKK ALFRNAGYGG RCV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	144	ERRRRKRL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269\|PubMed:17088607}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466677.1	0.0	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	4e-64	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A0D2NMP0	0.0	A0A0D2NMP0_GOSRA; Uncharacterized protein
STRING	Gorai.002G137900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24642	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-59	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Gorai.002G137900.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]