PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G135000.1

Common Name

B456_002G135000, LOC105785208

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 255aa MW: 28360.1 Da PI: 6.5089

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G135000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.4e-13	41	88	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er RR+++++ f+ L llP++ K +K++i+ +Av YIk+Lq Gorai.002G135000.1 41 MHIWTERERRKKMRNMFSSLHALLPQL----PAKADKSTIVDEAVTYIKNLQ 88 67778*******************6....39****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-16	35	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.094	37	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-15	40	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-14	40	92	No hit	No description
Pfam	PF00010	3.2E-10	41	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-9	45	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	9.81E-5	172	236	No hit	No description
Gene3D	G3DSA:3.30.70.260	0.001	175	249	No hit	No description
CDD	cd04873	0.00169	177	211	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MELETVAVAE VGQKRSRKGG LKQGKANGGG DHGGDQSEHE MHIWTERERR KKMRNMFSSL 60 HALLPQLPAK ADKSTIVDEA VTYIKNLQQT LQTLEKQKLE KLRNSAKVDY DQSSIITSQV 120 QPPESREAFF TDNQGPTNNY PVAIDMSQTF PAQASQACFQ TWFSSNVVIS MCGDDAQINV 180 CSPRKPGTFA TILYILEKHQ LEVVSAHISS DQYRTMYMIH VHAGGASEQF PELLSIEETF 240 KLAAGEMNLC LFSC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466617.1	0.0	PREDICTED: transcription factor bHLH95-like
TrEMBL	A0A0D2R5G8	0.0	A0A0D2R5G8_GOSRA; Uncharacterized protein
STRING	Gorai.002G135000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5074	25	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	6e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G135000.1
Entrez Gene	105785208

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]