PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G106300.1
Common NameB456_002G106300, LOC105782572
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 353aa    MW: 40114.6 Da    PI: 5.2283
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G106300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W+++Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Gorai.002G106300.1 16 RGPWSPQEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                        89******************************99************97 PP
2Myb_DNA-binding53.55.4e-1769114148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  Gorai.002G106300.1  69 RGNFSKEEEETIIRLHETLGNK-WSKIASHLP-GRTDNEIKNMWNTHL 114
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-23766IPR009057Homeodomain-like
PROSITE profilePS5129415.3461163IPR017930Myb domain
SuperFamilySSF466891.21E-2914110IPR009057Homeodomain-like
SMARTSM007174.4E-131565IPR001005SANT/Myb domain
PfamPF002492.2E-151663IPR001005SANT/Myb domain
CDDcd001673.41E-91863No hitNo description
PROSITE profilePS5129425.90264118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2767118IPR009057Homeodomain-like
SMARTSM007171.0E-1768116IPR001005SANT/Myb domain
PfamPF002497.1E-1669114IPR001005SANT/Myb domain
CDDcd001677.59E-1271114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGKGRAPCCD KDKVKRGPWS PQEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFSKEEEETI IRLHETLGNK WSKIASHLPG RTDNEIKNMW NTHLKKRLAP  120
KNGKIPQNDE SKETCMVSSS CSSITFVSSP CGKRNLEVEL EQQWHEGSPS KKPREGFPVS  180
DKAEDYKTEV PSHNSRPFEE PKEFPSSSIS SSNSNITNSS QVNVPNPENH GDSLLNFVGV  240
CDWKNNTSEE VNKPEILNTA FDIPLESDSD FWDMLDSLGS FQPDEIQSNE VEGNQSPDFG  300
EEYSKENENN KWLQYLEIEL GLEVTKNENH NNLSNTAAEP LVPEMYDMLL KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-26161184105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591392e-53AJ459139.1 Gossypium hirsutum partial myb113 gene, clone pGhMYB113.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462848.10.0PREDICTED: myb-related protein 305-like
TrEMBLA0A0D2R3V60.0A0A0D2R3V6_GOSRA; Uncharacterized protein
STRINGGorai.002G106300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.11e-76myb domain protein 72
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]