PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 535aa MW: 58472.6 Da PI: 7.0382

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G089900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.8	3.3e-15	32	79	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l+d+v+ +G g+W+++ + g+ R++k+c++rw ++l Gorai.002G089900.1 32 KGPWTAAEDAVLADYVRTHGEGNWNAVQKNTGLARCGKSCRLRWANHL 79 79******************************************9986 PP
2	Myb_DNA-binding	49.2	1.2e-15	85	128	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++v++++++G++ W++ a ++ gRt++++k++w++ Gorai.002G089900.1 85 KGAFSPEEERIIVELHAKMGNK-WARMATQLP-GRTDNEIKNYWNT 128 799*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.158	27	79	IPR017930	Myb domain
SuperFamily	SSF46689	1.17E-28	31	126	IPR009057	Homeodomain-like
SMART	SM00717	7.3E-12	31	81	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-14	32	79	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-23	33	86	IPR009057	Homeodomain-like
CDD	cd00167	8.56E-10	34	79	No hit	No description
PROSITE profile	PS51294	25.567	80	134	IPR017930	Myb domain
SMART	SM00717	8.2E-16	84	132	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-14	85	128	IPR001005	SANT/Myb domain
CDD	cd00167	3.13E-11	87	128	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.5E-25	87	133	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0090406	Cellular Component	pollen tube
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MMMMGGNNQI TTQNEGGGSN NGGGEGGIML KKGPWTAAED AVLADYVRTH GEGNWNAVQK 60 NTGLARCGKS CRLRWANHLR PNLKKGAFSP EEERIIVELH AKMGNKWARM ATQLPGRTDN 120 EIKNYWNTRV KRRQRQGLPL YPPEIQPLYS QHQRNQHRSL PSTPLPSPTA TSTSSFSFQT 180 PPNPSSSTTL HGSILTPAHP LHIPRSASSH VLYNPQTPPP LHSASAVSTP CPSPLPSSSP 240 STPTPVSPLQ SPHKPAFSTL PLFDSSTSNT CNNNINTNNA ILQSPSDFFF PRATPPLQTP 300 MRYKRFRPDV SESINNERHN NSISVNGGCS STSSSFMSQY PPFQKTSFFN SHAAPNVTTS 360 TPLTSPHYSP SYTLDPVTLD LASSSRILAD HQNFDNGQFI STPGFDYTSK TDDLPSNQFL 420 SLDGTSEVTF DTKGNCNYIS NDQNNHHHLS IHFGGGGLLD DMLEEAQLLA GDNDILRRES 480 CLDGFNTSSD GLTSGKEETV TDQEINATQE EYSRLLNAIP SSMPMPDWYN NCGK*

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MMMMGGNNQI TTQNEGGGSN NGGGEGGIML KKGPWTAAED AVLADYVRTH GEGNWNAVQK  60
NTGLARCGKS CRLRWANHLR PNLKKGAFSP EEERIIVELH AKMGNKWARM ATQLPGRTDN  120
EIKNYWNTRV KRRQRQGLPL YPPEIQPLYS QHQRNQHRSL PSTPLPSPTA TSTSSFSFQT  180
PPNPSSSTTL HGSILTPAHP LHIPRSASSH VLYNPQTPPP LHSASAVSTP CPSPLPSSSP  240
STPTPVSPLQ SPHKPAFSTL PLFDSSTSNT CNNNINTNNA ILQSPSDFFF PRATPPLQTP  300
MRYKRFRPDV SESINNERHN NSISVNGGCS STSSSFMSQY PPFQKTSFFN SHAAPNVTTS  360
TPLTSPHYSP SYTLDPVTLD LASSSRILAD HQNFDNGQFI STPGFDYTSK TDDLPSNQFL  420
SLDGTSEVTF DTKGNCNYIS NDQNNHHHLS IHFGGGGLLD DMLEEAQLLA GDNDILRRES  480
CLDGFNTSSD GLTSGKEETV TDQEINATQE EYSRLLNAIP SSMPMPDWYN NCGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-30	30	133	5	107	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578703	6e-95	JX578703.1 Gossypium hirsutum clone NBRI_GE10781 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460804.1	0.0	PREDICTED: myb-like protein A
TrEMBL	A0A0D2M8I7	0.0	A0A0D2M8I7_GOSRA; Uncharacterized protein
STRING	Gorai.002G089900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	7e-70	myb domain protein 101

Link Out ? help Back to Top
Phytozome	Gorai.002G089900.1
Entrez Gene	105780827

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]