PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G079200.1 | ||||||||
Common Name | B456_002G079200, LOC105779907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 478aa MW: 52528 Da PI: 7.1401 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.6 | 7e-06 | 365 | 403 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Gorai.002G079200.1 365 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 403 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.595 | 354 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.32E-7 | 364 | 408 | No hit | No description |
SuperFamily | SSF47459 | 1.16E-10 | 364 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0023 | 365 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-9 | 368 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MADEFNTGTN WWDSSRTAGS SSSSSGLNNS FAWATEMVDI KAARSPMDSV SSVSGSSVVF 60 HDNPKLQVGL GPDHHHHHHH HHHHPPSDLQ MMGLGLPSQA MDWNQALLRG DKSEVSFRSM 120 LQDHNLNASN ANYPHQQQET GGIGSSQLHW RDKMFTGDAE LKQIGRGFSL DQSQFSPHGS 180 SSDSTVTCQS LPSSFQMDSS TALYGSPSTI LQGLLGSENQ PQQQQQQQQS SYENRSMNYQ 240 YGAAAATSYG MNTNDQLLPN ALSKVPQFLR SSPPKQQLHG QLHFSNNAPF WNPSAAAAAS 300 MTDHVRPGFF PSLQTQFQTG TFDEKPKNIS EVRETSTVVK KSGNEPASTK RPRNETPSTM 360 PAFKVRKEKM GDRITALQQL VSPFGKTDTA SVLSEAIEYI KFLHAQVSQV LSTPYMKNEA 420 TIQHHQQNPE KSKDPAEGPK QDLRSRGLCL VPVSSTFPLT NESPVDFWTP TFGGTFR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX583456 | 1e-83 | JX583456.1 Gossypium hirsutum clone NBRI_GE16500 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012459379.1 | 0.0 | PREDICTED: transcription factor bHLH123-like isoform X3 | ||||
Swissprot | Q8GXT3 | 4e-87 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A0D2Q9I0 | 0.0 | A0A0D2Q9I0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G079200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4024 | 25 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 5e-79 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G079200.1 |
Entrez Gene | 105779907 |
Publications ? help Back to Top | |||
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