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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G019700.1 | ||||||||
Common Name | B456_002G019700, LOC105786628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 257aa MW: 28955.2 Da PI: 5.4714 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57.7 | 4e-18 | 11 | 132 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 p GfrF Pt ee++++yLk+ +++++++ + + + ePw++ ++ ++ f++ ++ k+++++r +r++ +g W ++ kev Gorai.002G019700.1 11 PIGFRFLPTKEEILCDYLKPIIKADPIPS-G-VMMFYGANREPWNIF---DQ-DSAESFWVITKLKKRSKSRIERTAGDGCWLQQYV-KEV 94 89************************999.5.445556678*****5...33.344456666666677899***********98877.555 PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmh.eyrl 128 ++k +ge++g k +++ + +++k ++ +Wvmh ey+l Gorai.002G019700.1 95 KHKdGGEVIGFDKYFTLITSKKSKKSNGQWVMHdEYSL 132 55549999************************956776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-20 | 4 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.397 | 10 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-11 | 11 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSTVRSQLQI PIGFRFLPTK EEILCDYLKP IIKADPIPSG VMMFYGANRE PWNIFDQDSA 60 ESFWVITKLK KRSKSRIERT AGDGCWLQQY VKEVKHKDGG EVIGFDKYFT LITSKKSKKS 120 NGQWVMHDEY SLKDQEAASA GLSDSVICEI KNKDAAVVSS DYEESEGEIK KNKKRKLMEV 180 PSDSTNDVAI VPEENQTFDY MAAEVGGFSP SPPFSACLNQ QPNPWTWQVL KAILECLIII 240 LTICYLPNPC TIFTCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 176 | KKNKKRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX596395 | 3e-73 | JX596395.1 Gossypium hirsutum clone NBRI_GE32970 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468600.1 | 0.0 | PREDICTED: NAC domain-containing protein 68-like | ||||
TrEMBL | A0A0D2PZE4 | 0.0 | A0A0D2PZE4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G019700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16345 | 3 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 7e-15 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G019700.1 |
Entrez Gene | 105786628 |
Publications ? help Back to Top | |||
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