PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G007600.2 | ||||||||
Common Name | B456_002G007600, LOC105773209 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 437aa MW: 49748.5 Da PI: 9.2282 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61 | 2e-19 | 90 | 179 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +k ++ps+v+ +l lpk+f+ +h +k e+++++lede+g++++vk+ ++k + l++GW++F a++L egD++vF+l++ s+f Gorai.002G007600.2 90 IKYMLPSHVTGGFWLGLPKHFCLNHL-PK-EDRMMVLEDEEGKEFQVKYLVEKIG----LSGGWRGFSIAHKLLEGDVCVFHLVRPSKF-- 172 57899*****************9884.33.5679***************555555....************************998999.. PP EEEEE-S CS B3 93 vvkvfrk 99 +v ++rk Gorai.002G007600.2 173 KVYIVRK 179 8888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-22 | 82 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-25 | 84 | 183 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.96E-26 | 87 | 178 | No hit | No description |
PROSITE profile | PS50863 | 13.211 | 89 | 180 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-21 | 89 | 180 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-17 | 90 | 179 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MAVSPKQRIS SLKQVSRGRG RPPKTKLFRK KVPAMTVNQI VSYEKEKAQC NKRKRATYDE 60 VYENGQTKLA VMERALDIQA NLSSEFPSMI KYMLPSHVTG GFWLGLPKHF CLNHLPKEDR 120 MMVLEDEEGK EFQVKYLVEK IGLSGGWRGF SIAHKLLEGD VCVFHLVRPS KFKVYIVRKK 180 CSDEVDVALG LLKLESSTQL VDNGKELKIC EISVGKTEDR NAPILYSSNI ERTVDQSKNN 240 RVDLGSEVSD GVRLSDSIVN FREVKSFEDF NILVNGLVID SEFSKYLQMK YYELCCNQNS 300 FLHENLLEGL NCKLVAGVIA ETINIADAIR AAKLTTPHDS FLTWDKTLRS FEGLGMKVGF 360 LRARLDKLMN LLTKSRRYKE VKLEQANSNE EKLKLEAKLA EVTHTLTKLD REIRLFKQEK 420 ADDLEALFRE VANGPW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012450378.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A0D2M527 | 0.0 | A0A0D2M527_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G007600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-42 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G007600.2 |
Entrez Gene | 105773209 |
Publications ? help Back to Top | |||
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