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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Gorai.001G274500.1 |
| Common Name | B456_001G274500, LOC105769867 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
NAC |
| Protein Properties |
Length: 246aa MW: 27879 Da PI: 10.0445 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.001G274500.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 111.6 | 9e-35 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdk 90
+p G+rF+Ptdeelvv+yLk+k+ + +l++ +vi+e+d+++++Pw+Lp v +++ yfFs+r + +++k+++r ++ sgyWk gk+k
Gorai.001G274500.1 14 MPIGYRFRPTDEELVVHYLKRKALNLPLPA-SVIPEFDVFQTDPWSLPGDV---KEKRYFFSSRYGNDSNNKKRKRvVAGSGYWKPIGKEK 100
699***************************.99***************554...4578******9999999999997888*********** PP
NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
++l++ ++++vg+++ L+f + + + +k +W++h++rl
Gorai.001G274500.1 101 PILASgTNQVVGMRQALIFCERKLCTDTKPRWLLHQFRL 139
***9967778***********999999**********98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MEGQRFVVNG GIKMPIGYRF RPTDEELVVH YLKRKALNLP LPASVIPEFD VFQTDPWSLP 60
GDVKEKRYFF SSRYGNDSNN KKRKRVVAGS GYWKPIGKEK PILASGTNQV VGMRQALIFC 120
ERKLCTDTKP RWLLHQFRLV GSADQTQMTK REWHGDWVVF KVIQRKRNAK KHGVICSNSQ 180
TTRAAAYMPS CIDFTVEDSS MFGPPQPTSP SSSEITEVSP NGLLDQEESS AAVITTFLHY 240
CMRKQ*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 9e-30 | 12 | 171 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 9e-30 | 12 | 171 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 9e-30 | 12 | 171 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 9e-30 | 12 | 171 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 9e-30 | 12 | 171 | 15 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 9e-30 | 12 | 171 | 15 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX589385 | 1e-41 | JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence. |
