PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 248aa MW: 28331.3 Da PI: 9.5377

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G271700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00032	95	117	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H Gorai.001G271700.1 95 SCSVCSRVYPTSRLLSIHVSEaH 117 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	5.2	67	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	69	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	5.4	94	117	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	96	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.092	132	157	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	134	157	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MAMVVDYKHD SSFPYWTSVR RRFAPDSPFF SSGNIERELL AKQVALDFTE DERNQLEKMI 60 DTDARGVFCP IVGCGARLTL LEDFEDHYNT RHTASCSVCS RVYPTSRLLS IHVSEAHDSF 120 FQAKVARGYA MYECLVEGCD LKFKNYKGRQ QHLVDKHKFP TSFEFFKKAH PSKKQRLKNQ 180 RKRAVNKKDE EVPSKMEVEN EMMEGLVSAV SKLSTSDSSP STVSFGRRNA RGLTFVPRSI 240 QPPLQKK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	182	KKQRLKNQRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445934.1	0.0	PREDICTED: zinc finger protein 511
TrEMBL	A0A0D2M3U4	0.0	A0A0D2M3U4_GOSRA; Uncharacterized protein
STRING	Gorai.001G271700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9971	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-111	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Phytozome	Gorai.001G271700.1
Entrez Gene	105769687

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]