PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G263600.1
Common NameB456_001G263600, LOC105768844
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 510aa    MW: 57117.4 Da    PI: 5.4389
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G263600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-17259305148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT++Ed  l ++v+++G++ W+ Ia++++ gR +kqc++rw+++l
  Gorai.001G263600.1 259 KGQWTPQEDRVLMQLVTRHGTKKWSQIAKMLN-GRVGKQCRERWHNHL 305
                         799*****************************.*************97 PP
2Myb_DNA-binding53.36.5e-17311353145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W++eEd +l+ a+k+ G++ W+ Ia++++ gRt++ +k++w+
  Gorai.001G263600.1 311 KDSWSEEEDMILIAAHKEIGNK-WAEIAKRLP-GRTENTIKNHWN 353
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.544254309IPR017930Myb domain
SuperFamilySSF466894.12E-31256352IPR009057Homeodomain-like
SMARTSM007171.3E-14258307IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-28260312IPR009057Homeodomain-like
PfamPF139214.1E-19262319No hitNo description
CDDcd001671.48E-13262305No hitNo description
PROSITE profilePS5129419.825310360IPR017930Myb domain
SMARTSM007172.4E-16310358IPR001005SANT/Myb domain
CDDcd001671.47E-12313356No hitNo description
Gene3DG3DSA:1.10.10.604.5E-22313358IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MEYDTSFKED FPFLSSLFSE NNSSSSFKPD FNGCFPLPDG SSPSSSSSPS SSSSKALVHN  60
FILNQDQDTT PTGNNNTGSL LNNHPHHFHQ FPIDGSSKNP FFEDSTTCTD PFIDPYTNDL  120
NAYIPSLSFT VPDHGTSLNN GLTFQAFSTE SPCWDFSQNK ASAPSETGEH HRSYQQQQLE  180
PMDFQDQPPT PPPPPPPPVA TKVAEDASCI TNQNGRNNNN QDRDDDDDDD DDDEKNNNNR  240
RFLKAKRVNQ ATKKTSIIKG QWTPQEDRVL MQLVTRHGTK KWSQIAKMLN GRVGKQCRER  300
WHNHLRPDIK KDSWSEEEDM ILIAAHKEIG NKWAEIAKRL PGRTENTIKN HWNATKRRQF  360
TRRSKAKDGN SNPPKGSLLQ NYIKSVSSPT ELTPAAAASS SSQHDNEFEM TDASPHMVQP  420
ETSGLNSTGW SIGALNDHVQ RQRQQQQEMN YCFDANVYND MHRNQSFGSM LEGDGNGNGS  480
GMGNFELPLE MDSLKKELDL LEMISQGNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-452573592104C-Myb DNA-Binding Domain
1msf_C4e-452573592104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6154681e-167JX615468.1 Gossypium hirsutum clone NBRI_GE59465 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444519.10.0PREDICTED: myb-like protein AA
TrEMBLA0A0D2NEN80.0A0A0D2NEN8_GOSRA; Uncharacterized protein
STRINGGorai.001G263600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.11e-72myb domain protein 118
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]