PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G251300.1

Common Name

B456_001G251300, LOC105771732

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 190aa MW: 21428.4 Da PI: 5.9221

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G251300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Gorai.001G251300.1 43 YECVFCKRGFTTAQALGGHMNIH 65 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.5E-4	41	69	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.39E-6	41	69	No hit	No description
PROSITE profile	PS50157	10.99	43	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MRFWDSKSTL SMESSQLEDS KSSSEDTDRS EQSNDDTGTG RSYECVFCKR GFTTAQALGG 60 HMNIHRKDRA KSSRPSSVPI VSDKFVDVDD HDNYNPRISS YPYPPIQTYH SMDPDQLPVS 120 YKALFPDSGW GFRPPHSYHE LFVHNSQHLN PFGLSLGMGP SHVYENNKAY GSSQQDDELD 180 LELRLGHHP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448590.1	1e-139	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A0D2M2V1	1e-138	A0A0D2M2V1_GOSRA; Uncharacterized protein
STRING	Gorai.001G251300.1	1e-139	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15373	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	1e-13	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G251300.1
Entrez Gene	105771732

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]