PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G242500.1
Common NameB456_001G242500, LOC105766618
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 300aa    MW: 31739.9 Da    PI: 7.3512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G242500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09147191554
                         HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Gorai.001G242500.1 147 HSIAERLRRERIAERIRGLQELVPSvN------KTDRAAMLDEIVDYVKFL 191
                         99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14140201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.694142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-14144201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-7147191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-10148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MASNPNEAPA DGFLDQILGL PQFAHTDTGL AGSDGGLAGA PMFLHLNSAD GAGHLGRIGG  60
GGGGAFHGQV FPLGLSLEQG EGGFLKQEEA SGRGKRFREG VVDGRTASVK NVFHGQPMAG  120
AVAAAAAHPP AMRPRVRARR GQATDPHSIA ERLRRERIAE RIRGLQELVP SVNKTDRAAM  180
LDEIVDYVKF LRLQVKVLTM SRLGGAAAVA PFVIDIPLSS IEDERGESGR SQPAWEKWSN  240
DGTERHVAKL MEENVGAAMQ FLQSKALCIM PVSLAKAIYH TQPPDTSSSI VKPETDPTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5795269e-62JX579526.1 Gossypium hirsutum clone NBRI_GE11785 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441593.10.0PREDICTED: transcription factor UNE12-like isoform X1
SwissprotO227681e-124UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D2Q3V00.0A0A0D2Q3V0_GOSRA; Uncharacterized protein
STRINGGorai.001G242500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.24e-98bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]