PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G234900.3 | ||||||||
Common Name | B456_001G234900, LOC105761054 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 562aa MW: 61042.2 Da PI: 6.2007 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.2 | 9.6e-16 | 352 | 398 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Gorai.001G234900.3 352 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 398 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.63E-21 | 346 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.044 | 348 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.00E-16 | 351 | 402 | No hit | No description |
Pfam | PF00010 | 3.4E-13 | 352 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-21 | 352 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-17 | 354 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MNHCVPDFEM EDDYSIPSSS ILNRAKKPSM PEDGIMELLW QNGQVVMQSQ NQRSFKKPSP 60 FKYLDAGQSA LREIRSSSHH QQQQQQQQQQ QQSVTDHLFM QEDEMASWLH NPLSDANFDH 120 DFCADLLYPS SSTAVAPCVT STATTSAPPP PPLGRVPQVS ASAIVPASRP PIPPARRNEL 180 ESTRIQNFGS LSKHKTAARE EQPGPSNSKS VAREVTVVDS SDTPAAAPES GASQAMPWNT 240 EAASGEDNND ACANMSFAAV AYTQSAGVSV GASKDNIATC EATVTSSPGG SSASASAEPT 300 AQKTGPAEDR KRKGREPDDA ECHSEDAEFE SPETKKQSRG SSSTKRSRAA EVHNLSERRR 360 RDRINEKMRA LQELIPRCNK SDKASMLDEA IEYLKSLQLQ VQMMSMGCGM LPMMFPQHYM 420 PTMGMGIGMG MVMDMGLSRP MMPFHNVMAG SGLPTPAASA HLDPRFPVPA FHMSPQVPVP 480 DPSRIQPNNQ SDAMLNPLGM QNPNQPRIPS FADPYQQYMG LHQMQLHPPQ CQATAQPSSS 540 KPSTSKGAEN LENHPSGDMA R* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 356 | 361 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.53 | 0.0 | seedling |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48797306 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ394260 | 1e-40 | GQ394260.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1225 SSR marker CGR6819 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012434175.1 | 0.0 | PREDICTED: transcription factor PIF1-like | ||||
Refseq | XP_012434181.1 | 0.0 | PREDICTED: transcription factor PIF1-like | ||||
Refseq | XP_012434189.1 | 0.0 | PREDICTED: transcription factor PIF1-like | ||||
Refseq | XP_012434197.1 | 0.0 | PREDICTED: transcription factor PIF1-like | ||||
TrEMBL | A0A0D2PVT8 | 0.0 | A0A0D2PVT8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G234900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 7e-69 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G234900.3 |
Entrez Gene | 105761054 |
Publications ? help Back to Top | |||
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