PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G233700.1
Common NameB456_001G233700, LOC105804734
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 268aa    MW: 30909.7 Da    PI: 6.2812
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G233700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.81.9e-2017103287
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt+ e+l Li+a++e++ +l+rg+lk+++Weev+  +       +    +++ qC++k+e+l++ry+ ++++ ++      s +py+d +e
  Gorai.001G233700.1  17 WTHPETLNLIQAYQEKWYSLQRGQLKANQWEEVAVTVatrcglFDDSAAKTALQCRHKMEKLRRRYRSERQNLGSA-----SPWPYYDAME 102
                         *************************************999999889999*************************84.....57*******8 PP

            trihelix  87 a 87 
                         a
  Gorai.001G233700.1 103 A 103
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-1916104No hitNo description
SMARTSM005953.3E-724109IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSYDPSPAAK KPQSLPWTHP ETLNLIQAYQ EKWYSLQRGQ LKANQWEEVA VTVATRCGLF  60
DDSAAKTALQ CRHKMEKLRR RYRSERQNLG SASPWPYYDA MEALEQGPLP ISARPLTSIV  120
PNGHEAGNYY HNDDENNPIE EEEEDDEEHE GGNRFSKSRS INYILRRPSV VNRFSGLMKK  180
RVRTEEEGDG DAAITGKGEE DKGVELAMEI RRFADRFMRM ERKKMEIMHE TERLRKEMEN  240
KRIEMILNSE KKIVDAISTS LGSQTKE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431130.0AC243113.1 Gossypium raimondii clone GR__Ba0039D03-hoc, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492903.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A0D2NDA30.0A0A0D2NDA3_GOSRA; Uncharacterized protein
STRINGGorai.001G233700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-66Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]