PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 403aa MW: 45641.3 Da PI: 4.4323

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G231400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.2	4.5e-38	5	136	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +GfrFhPtdeel+ + L + ++ +l +vi++v di+++ePw+L ++++++++ wyf ky+++kr +r+t++gyWk tg+ + Gorai.001G231400.1 5 KGFRFHPTDEELIEYLLLETFGVDRDSLVQVIDQVpDICQWEPWQLAesSQLQTGDRLWYFIYAPTYKYRNSKRISRTTREGYWKPTGNAR 95 7**********999999999999999999***********74348889999****************************** PP NAM 91 evlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++++ +ge++g+kktLvfykg +++ kt Wvmhey+l Gorai.001G231400.1 96 KIIDPqTGEVIGTKKTLVFYKGqcNDKYKIKTCWVMHEYEL 136 9878899*******98445556679******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	42.336	3	158	IPR003441	NAC domain
SuperFamily	SSF101941	7.45E-38	4	157	IPR003441	NAC domain
Pfam	PF02365	3.6E-20	5	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MNTVKGFRFH PTDEELIEYL LLETFGVDRD SLVQVIDQVP DICQWEPWQL AESSQLQTGD 60 RLWYFIYAPT YKYRNSKRIS RTTREGYWKP TGNARKIIDP QTGEVIGTKK TLVFYKGQCN 120 DKYKIKTCWV MHEYELVAAP NSIDIDQKTF NLCKLKKRVD ISCTDAGQSS QHKDCDDVVH 180 NQSGIKSYAG DRSNQHNIAN DGVVSNLSSH DLDDAIPKEN LHERSKECNE PEGNSGVQKL 240 NSIIEKDDKS CSSVLTDGDE TITVERSDQH NVVVAAEGFG IPSSFEYFDY EVLIPAEFFY 300 NDGLWYDELL EVPEATNNSN WIQDQSINNT EDVEFLNSII VDNDEAYLLE ENRPHPSAAD 360 NEVLGAVGSS DLMEKPSKRL RLSHDDHVET TEARAGGSIT YQ*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MNTVKGFRFH PTDEELIEYL LLETFGVDRD SLVQVIDQVP DICQWEPWQL AESSQLQTGD  60
RLWYFIYAPT YKYRNSKRIS RTTREGYWKP TGNARKIIDP QTGEVIGTKK TLVFYKGQCN  120
DKYKIKTCWV MHEYELVAAP NSIDIDQKTF NLCKLKKRVD ISCTDAGQSS QHKDCDDVVH  180
NQSGIKSYAG DRSNQHNIAN DGVVSNLSSH DLDDAIPKEN LHERSKECNE PEGNSGVQKL  240
NSIIEKDDKS CSSVLTDGDE TITVERSDQH NVVVAAEGFG IPSSFEYFDY EVLIPAEFFY  300
NDGLWYDELL EVPEATNNSN WIQDQSINNT EDVEFLNSII VDNDEAYLLE ENRPHPSAAD  360
NEVLGAVGSS DLMEKPSKRL RLSHDDHVET TEARAGGSIT YQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-23	1	136	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492565.1	0.0	PREDICTED: NAC domain-containing protein 67-like
TrEMBL	A0A0D2QUM6	0.0	A0A0D2QUM6_GOSRA; Uncharacterized protein
STRING	Gorai.001G231400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22206	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	1e-33	TCV-interacting protein

Link Out ? help Back to Top
Phytozome	Gorai.001G231400.1
Entrez Gene	105804468

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]