PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G230000.1

Common Name

B456_001G230000, LOC105804328

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 309aa MW: 34481.5 Da PI: 7.3246

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G230000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	164	211	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Gorai.001G230000.1 164 SHSLAERVRREKISERMKLLQDLVPGC----NKVIGKAVMLDEIIKYVQSLQ 211 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.59E-9	158	215	No hit	No description
SuperFamily	SSF47459	7.85E-17	158	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.294	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-17	161	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	164	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-10	166	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDNQFSLNAP PFHLEPSLSA SYYLSSAMDI HATELNCSQH CEQPTDYYGL HFHLPLSSMP 60 SQVGGFQGNN NNISPLQGRS KSVTSQNESL LNPNADLEAS KYWNSRKRTK TVETSASPTI 120 AAKGSERNQE SNEKRSNTNT NTKPLEPPKD YIHVRARRGE ATDSHSLAER VRREKISERM 180 KLLQDLVPGC NKVIGKAVML DEIIKYVQSL QRQVEFLSMK LASVNSRLDF KLDSVMSEDI 240 FQSNNNFAHP ISTIDSWASA IFGQQQQNLA LHSNVSNGTM TQCSVQPMDT AIWPQLQHPF 300 TSNQLPLS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616874	5e-91	JX616874.1 Gossypium hirsutum clone NBRI_GE61821 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492348.1	0.0	PREDICTED: transcription factor bHLH62-like
Swissprot	Q9SRT2	2e-62	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0D2ND15	0.0	A0A0D2ND15_GOSRA; Uncharacterized protein
STRING	Gorai.001G230000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24586	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G230000.1
Entrez Gene	105804328

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]