PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G221400.1
Common NameB456_001G221400, LOC105802955
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SAP
Protein Properties Length: 448aa    MW: 49644.7 Da    PI: 6.4217
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G221400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP695.94.6e-21214441454
                 SAP   1 mssssssssseseegseggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdl 91 
                         msss sssss+se+++  g++g ++ g++++ps +r+ra ne+wp Pf+e l +qvaidas s+Grla a alanvfqvcstw+avsrsd 
  Gorai.001G221400.1   1 MSSSLSSSSSSSEDAN--GNSGRRGVGDFGAPSLTRRRANNEIWPGPFVEDLVVQVAIDASCSFGRLAVAAALANVFQVCSTWQAVSRSDP 89 
                         7777666666555543..4444556689*************************************************************** PP

                 SAP  92 lwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlh 182
                         lw+rlt  iW rt+++++ Wreey+yrh+ta+nfr +r+ y tl+fdpa+vd+   +d l+Crcl+lsd++la+GfadG+vrlfdl+tr+ 
  Gorai.001G221400.1  90 LWHRLTTVIWGRTHRMHASWREEYVYRHQTAQNFRAGRSFYHTLHFDPASVDN---PDGLTCRCLTLSDTHLACGFADGTVRLFDLSTRQL 177
                         *************************************************8887...689******************************** PP

                 SAP 183 vstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWd 273
                         v tf+p+hrdr+GrfsravsGivisd r++fatldGdihva+idg  +  ar+a+lG+vvndGalvdf+G+grWwvGlyaGvpGra+hiWd
  Gorai.001G221400.1 178 VGTFHPHHRDRFGRFSRAVSGIVISDPRIIFATLDGDIHVAIIDG--EPLARTAHLGNVVNDGALVDFTGCGRWWVGLYAGVPGRALHIWD 266
                         *********************************************..6799**************************************** PP

                 SAP 274 aeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrG 364
                         ++teel fv   ltdPeavmGWh+ltelte++Grvrvt++e+avaCtslr +v+dlrn++  l+++e rr l v+sld++ ea+++vd+rG
  Gorai.001G221400.1 267 GNTEELAFVNTNLTDPEAVMGWHTLTELTETIGRVRVTGQESAVACTSLRYMVVDLRNPEFPLHDREWRRRLTVTSLDTNGEAFIMVDNRG 357
                         ******************************************************************************************* PP

                 SAP 365 vatvrrvenleevcrfrvrgaqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldfga 454
                          a+vrrv++leevcrf+ r+   +v+gC+n+gyal++a+gv+rvWeie+ +  lysl++ v+evna+vaddrhva++ sd+ ihl+dfga
  Gorai.001G221400.1 358 LAIVRRVDTLEEVCRFNTRN--VNVMGCMNLGYALMCAAGVVRVWEIEHGQ-HLYSLNQNVEEVNAMVADDRHVAAAGSDTGIHLWDFGA 444
                         *******************5..59************************976.9************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.508.3E-769144No hitNo description
SuperFamilySSF813831.05E-671118IPR001810F-box domain
SMARTSM003209126171IPR001680WD40 repeat
SuperFamilySSF509986.43E-20143284IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.130.10.101.6E-9147266IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM00320200174221IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.3E-8267444IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509986.43E-20331443IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
PROSITE profilePS502949.125395447IPR017986WD40-repeat-containing domain
SMARTSM003205.7404441IPR001680WD40 repeat
PROSITE patternPS006780428442IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSSSLSSSSS SSEDANGNSG RRGVGDFGAP SLTRRRANNE IWPGPFVEDL VVQVAIDASC  60
SFGRLAVAAA LANVFQVCST WQAVSRSDPL WHRLTTVIWG RTHRMHASWR EEYVYRHQTA  120
QNFRAGRSFY HTLHFDPASV DNPDGLTCRC LTLSDTHLAC GFADGTVRLF DLSTRQLVGT  180
FHPHHRDRFG RFSRAVSGIV ISDPRIIFAT LDGDIHVAII DGEPLARTAH LGNVVNDGAL  240
VDFTGCGRWW VGLYAGVPGR ALHIWDGNTE ELAFVNTNLT DPEAVMGWHT LTELTETIGR  300
VRVTGQESAV ACTSLRYMVV DLRNPEFPLH DREWRRRLTV TSLDTNGEAF IMVDNRGLAI  360
VRRVDTLEEV CRFNTRNVNV MGCMNLGYAL MCAAGVVRVW EIEHGQHLYS LNQNVEEVNA  420
MVADDRHVAA AGSDTGIHLW DFGAHEW*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence and floral meristems, young floral organ primordia, and later in ovule primordia.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490333.10.0PREDICTED: transcriptional regulator STERILE APETALA-like
SwissprotQ9FKH10.0SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A0D2NCQ20.0A0A0D2NCQ2_GOSRA; Uncharacterized protein
STRINGGorai.001G221400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.10.0SAP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]