PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G193500.1 | ||||||||
Common Name | B456_001G193500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 93aa MW: 10897.8 Da PI: 10.0823 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.4e-09 | 44 | 85 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR++i +++ L++l+P + +k +Ka +L + ++Y++sLq Gorai.001G193500.1 44 KVRREKISERMKYLQDLVPGC----NKITDKAGMLNEIINYVQSLQ 85 78*******************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00025 | 5.9E-11 | 2 | 45 | IPR006689 | Small GTPase superfamily, ARF/SAR type |
Gene3D | G3DSA:3.40.50.300 | 1.7E-5 | 2 | 40 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00328 | 8.4E-14 | 7 | 31 | IPR006689 | Small GTPase superfamily, ARF/SAR type |
PRINTS | PR00328 | 8.4E-14 | 34 | 59 | IPR006689 | Small GTPase superfamily, ARF/SAR type |
PROSITE profile | PS50888 | 13.186 | 34 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.03E-14 | 35 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-5 | 40 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 41 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.37E-7 | 43 | 89 | No hit | No description |
Pfam | PF00010 | 9.4E-7 | 44 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005525 | Molecular Function | GTP binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
RLAQHQPTQY PTLEELSIGM IKFKAFDLGC HQIARRVWKD YYAKVRREKI SERMKYLQDL 60 VPGCNKITDK AGMLNEIINY VQSLQRQVEV KK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in transport from the endoplasmic reticulum to the Golgi apparatus. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX585276 | 7e-66 | JX585276.1 Gossypium hirsutum clone NBRI_GE18804 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486176.1 | 5e-64 | PREDICTED: GTP-binding protein SAR1-like | ||||
Swissprot | P52885 | 1e-23 | SAR1_TOBAC; GTP-binding protein SAR1 | ||||
TrEMBL | A0A0D2Q138 | 1e-62 | A0A0D2Q138_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.001G193500.1 | 2e-63 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16325 | 3 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 3e-24 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G193500.1 |
Publications ? help Back to Top | |||
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