PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G191800.1
Common NameB456_001G191800, LOC105799670
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SAP
Protein Properties Length: 453aa    MW: 49629.6 Da    PI: 6.9777
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G191800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP700.22.3e-21334523455
                 SAP   3 ssssssss.eseegseggeggdass....gesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsr 88 
                         ssss+sss +se+g+ +g+g ++++    g++egps +r+r  ne+wp Pf+e l ++vaidasrs+Grlaaa a+a+vfqvcstw+avsr
  Gorai.001G191800.1   3 SSSSASSSsSSEDGNGNGNGNGHGArrggGDFEGPSLTRRRGNNEIWPGPFVEDLVVKVAIDASRSIGRLAAAGAIAHVFQVCSTWQAVSR 93 
                         44443333033333333333333334455************************************************************** PP

                 SAP  89 sdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdlet 179
                         sd lw+rlt+ iW rt++++ tW+eey+yrh+t++nfr +r+ +vtl+fdp+ vd    +d l+Crcl+lsd++la+GfadG+vrlfdl+t
  Gorai.001G191800.1  94 SDPLWHRLTSVIWGRTHRMHTTWHEEYVYRHQTSQNFRLGRSVHVTLHFDPTGVDI---PDGLTCRCLTLSDTHLACGFADGTVRLFDLAT 181
                         ****************************************************8888...689***************************** PP

                 SAP 180 rlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafh 270
                         rlhv tf+pqh+dr+GrfsravsGi+i+d +++fatldGdi+va+i+g  + +arra++G++v+dG lvdf+G+grWwvGlyaGvpGra h
  Gorai.001G191800.1 182 RLHVATFHPQHGDRFGRFSRAVSGIIITDPKIIFATLDGDIYVAIIEG--QHQARRAHIGNIVDDGSLVDFTGCGRWWVGLYAGVPGRAIH 270
                         ***********************************************9..78*************************************** PP

                 SAP 271 iWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvd 361
                         iWd++teelv+v  +ltd e+++GWhmltelte++Grvrvt++e+avaCts++ +v+dlrn+   l+++e++rG+iv sld++nea+++vd
  Gorai.001G191800.1 271 IWDGNTEELVYVNTTLTDRESLRGWHMLTELTEAIGRVRVTSQESAVACTSSKYMVLDLRNPAFPLHDRESARGFIVNSLDTNNEAFIIVD 361
                         ******************************************************************************************* PP

                 SAP 362 srGvatvrrvenleevcrfrvrgaqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldf 452
                         +rG a+vrr+++lee+crf+ r   ++++gC+n+gyal++a+gv+rvW ie+ + ylys+ e +g vna+  ddrhva++ss++tihl+df
  Gorai.001G191800.1 362 NRGRAIVRRADTLEELCRFNTR--LGNLMGCMNLGYALLCAAGVIRVWGIEHGQ-YLYSFGENIGAVNAMAGDDRHVAAASSNSTIHLWDF 449
                         ********************99..89*************************966.************************************ PP

                 SAP 453 gaq 455
                         gaq
  Gorai.001G191800.1 450 GAQ 452
                         *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.33E-578126IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.1E-578144No hitNo description
SMARTSM0032010133178IPR001680WD40 repeat
SuperFamilySSF509786.04E-16151287IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.1E-13156449IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509786.04E-16342448IPR017986WD40-repeat-containing domain
PROSITE profilePS502948.967402452IPR017986WD40-repeat-containing domain
SMARTSM003200.82411448IPR001680WD40 repeat
PROSITE patternPS006780435449IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSSSSSASSS SSSEDGNGNG NGNGHGARRG GGDFEGPSLT RRRGNNEIWP GPFVEDLVVK  60
VAIDASRSIG RLAAAGAIAH VFQVCSTWQA VSRSDPLWHR LTSVIWGRTH RMHTTWHEEY  120
VYRHQTSQNF RLGRSVHVTL HFDPTGVDIP DGLTCRCLTL SDTHLACGFA DGTVRLFDLA  180
TRLHVATFHP QHGDRFGRFS RAVSGIIITD PKIIFATLDG DIYVAIIEGQ HQARRAHIGN  240
IVDDGSLVDF TGCGRWWVGL YAGVPGRAIH IWDGNTEELV YVNTTLTDRE SLRGWHMLTE  300
LTEAIGRVRV TSQESAVACT SSKYMVLDLR NPAFPLHDRE SARGFIVNSL DTNNEAFIIV  360
DNRGRAIVRR ADTLEELCRF NTRLGNLMGC MNLGYALLCA AGVIRVWGIE HGQYLYSFGE  420
NIGAVNAMAG DDRHVAAASS NSTIHLWDFG AQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence and floral meristems, young floral organ primordia, and later in ovule primordia.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6194522e-54JX619452.1 Gossypium hirsutum clone NBRI_GE65288 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485797.10.0PREDICTED: transcriptional regulator STERILE APETALA-like
SwissprotQ9FKH11e-172SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A0D2NBI60.0A0A0D2NBI6_GOSRA; Uncharacterized protein
STRINGGorai.001G191800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-171SAP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]