PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G188300.1 | ||||||||
Common Name | B456_001G188300, LOC105799320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 26336.8 Da PI: 10.6181 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.8 | 4e-11 | 108 | 149 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa ++++a+ Gorai.001G188300.1 108 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 149 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.5E-4 | 107 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-5 | 107 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-7 | 108 | 152 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-6 | 110 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVSLRRRKLL GLCSGTSSFF TPLSRFFDNG NAPGNSSQSA KLVSVHPMPS DPIHMNGKSI 60 PKVASGSPNV SGSGSSKEHH NQPFPGQPIK RRKRHRRKHV QNQEPCLMRG VYFKNMKWQA 120 AIKVDKKQIH LGTVGSQEEA AHLYDRAAFM CGREPNFELS EEEKQELRKF KWEEFLAYTR 180 RSITNKKYKR RLGKVEPQKR SEPAMENSEW DNKQGVNSFS ASEEFGPDSS AS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012485270.1 | 1e-173 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_012485278.1 | 1e-173 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A0D2NBD2 | 1e-172 | A0A0D2NBD2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G188300.1 | 1e-173 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6189 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 2e-49 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G188300.1 |
Entrez Gene | 105799320 |
Publications ? help Back to Top | |||
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