PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G176500.1
Common NameB456_001G176500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 238aa    MW: 26082.8 Da    PI: 7.6186
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G176500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1866116256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Gorai.001G176500.1  66 TYRGVRIRS-WGKWVSEIREPRK---KSRIWLGTYSTAEMAARAHDVAALAIKGH 116
                         69****888.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381238.3E-222219IPR017392AP2/ERF transcription factor ERF/PTI6
SMARTSM003806.8E-3666129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3166124IPR001471AP2/ERF domain
PROSITE profilePS5103222.73466123IPR001471AP2/ERF domain
PfamPF008471.1E-1266116IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2166124IPR016177DNA-binding domain
PRINTSPR003674.0E-106778IPR001471AP2/ERF domain
CDDcd000184.40E-3067123No hitNo description
PRINTSPR003674.0E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSTTASTSTS SSTGFSFPGF RKNKKTSKNS VAPQESKKAG DYSEENGNGK KKRGMISEDG  60
GSKHPTYRGV RIRSWGKWVS EIREPRKKSR IWLGTYSTAE MAARAHDVAA LAIKGHKAYL  120
NFPQLAKELP RPASTSPKDI QAAASQAASS TFLETRRSTI EDEAGPNQEE IPVSHSSFTS  180
AASDNLQESS TSLFTHDDDT LFDLPDLMID CSYSSAWQIC AVDAGFRTEE PFVWDYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1861124973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747768.11e-173PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ77e-63ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D2Q0981e-176A0A0D2Q098_GOSRA; Uncharacterized protein
STRINGGorai.001G176500.11e-176(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]