PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G175400.1
Common NameB456_001G175400, LOC105797695
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 370aa    MW: 41688.4 Da    PI: 6.7926
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G175400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078426123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC+ C ksF +   L  H+r+H
  Gorai.001G175400.1  4 HKCKLCFKSFANGRALGGHMRSH 26
                        79********************9 PP
2zf-C2H214.20.00013240262123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k+F++   L  H  +H
  Gorai.001G175400.1 240 YKCETCNKVFKSYQALGGHRASH 262
                         9************9999998887 PP
3zf-C2H211.40.001296318123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp C ++Fs+   L  H r+H
  Gorai.001G175400.1 296 HECPVCFRVFSSGQALGGHKRSH 318
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.85E-5330No hitNo description
PfamPF139123.9E-6427IPR007087Zinc finger, C2H2
SMARTSM003550.051426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139124.5E-11240264IPR007087Zinc finger, C2H2
SuperFamilySSF576674.49E-9240262No hitNo description
SMARTSM003550.01240262IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887240267IPR007087Zinc finger, C2H2
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
SuperFamilySSF576674.49E-9291318No hitNo description
PfamPF139124.8E-11296318IPR007087Zinc finger, C2H2
PROSITE profilePS501579.224296318IPR007087Zinc finger, C2H2
SMARTSM003550.19296318IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEKHKCKLCF KSFANGRALG GHMRSHMLNL PIPPKLAEQQ RLGLPRPTNQ LSEESESESA  60
SASYSSSSSE EEEGEEKGQF YGLRENPKRS VRLVDPEFID AGSVVLQDRE SETESSKNPT  120
RRRSKQTRRI LENHQQQRQE QQEERKKLKV NNSSSNNNNN QVSKTEPWAE PEPVSSISDA  180
TTEEDVAFCL MMLSRDQWKS KVLHLDDEEG TEIEKSTEQS YELQEYFKLS KVNRAIRGKY  240
KCETCNKVFK SYQALGGHRA SHKKMKAYSP PATHDTELEP ENVGTRPSSM TDKKIHECPV  300
CFRVFSSGQA LGGHKRSHVV ATTEIPVKSS KKLGDSFIDL NLPAPMDDDD ASQIELSAVS  360
DAEFVNHIK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9642851e-127JX964285.1 Gossypium hirsutum clone NBRI_TRANS-554 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483087.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A0D2Q0830.0A0A0D2Q083_GOSRA; Uncharacterized protein
STRINGGorai.001G175400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-66C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]