PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G169700.2
Common NameB456_001G169700, LOC105797118
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 296aa    MW: 32779 Da    PI: 8.2164
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G169700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W +eEde+l+++++++G g+W++ ++  g++R++k+c++rw +yl
  Gorai.001G169700.2 14 KGPWGPEEDEILINYINKHGHGSWRSLPKLSGLRRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding491.4e-1567112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T +E++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
  Gorai.001G169700.2  67 RGPFTLDEEKLVIQLHAILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-25564IPR009057Homeodomain-like
PROSITE profilePS5129424.568965IPR017930Myb domain
SuperFamilySSF466892.79E-3011108IPR009057Homeodomain-like
SMARTSM007174.4E-141363IPR001005SANT/Myb domain
PfamPF002498.8E-161461IPR001005SANT/Myb domain
CDDcd001674.61E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.71166116IPR017930Myb domain
SMARTSM007172.0E-1466114IPR001005SANT/Myb domain
PfamPF002491.5E-1467112IPR001005SANT/Myb domain
CDDcd001673.57E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRRPCCERK GLKKGPWGPE EDEILINYIN KHGHGSWRSL PKLSGLRRCG KSCRLRWTNY  60
LRPDIKRGPF TLDEEKLVIQ LHAILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLCMG  120
VDPLTHEPFT SGGPTTRPRS SPATRHMAQW ESARLEAEAR LSKESLFFNS PPTSVKPDPD  180
FFLRLWNSEV GESFRKLNGE AKADCRSPIS QASSSTKCGS VSGVTIDVGP IAAGSSTPKS  240
SRTEDPIMFD ASFSSSSNES EDSSDTALQL LLDFPINNDM SFLDDVDTYA TPPQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591694e-70AJ459169.1 Gossypium hirsutum partial myb139 gene, clone pGhMYB139.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482512.10.0PREDICTED: myb-related protein 308-like
SwissprotQ9M2D91e-122MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A0D2LZK90.0A0A0D2LZK9_GOSRA; Uncharacterized protein
STRINGGorai.001G169700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-120myb domain protein 17
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]