PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G153900.6
Common NameB456_001G153900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 578aa    MW: 64259.6 Da    PI: 6.7226
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G153900.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.3e-23130230198
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+k+lt sd++++g +++ +k+a+e+     +++ + +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   +
  Gorai.001G153900.6 130 FCKILTASDTSTHGGFSVLRKHATEClppldMNQATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--R 218
                         99****************************9555556679************************************************..3 PP

                         SSEE..EEEEE- CS
                  B3  87 rsefelvvkvfr 98 
                          +++el+v+++r
  Gorai.001G153900.6 219 GDNGELRVGARR 230
                         489999**9987 PP
2Auxin_resp102.26.4e-34256335183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aaha++t++ F v+Y+Pr+  s+F++ v+k+++a+k+ +svGmRfkm+fe+ed + rr++Gt+vgv d++p +W++SkWr Lk
  Gorai.001G153900.6 256 AAHAVTTQTLFVVYYKPRT--SQFIIGVNKYLEAIKNGFSVGMRFKMRFEGEDTPDRRFTGTIVGVGDFSP-HWSESKWRTLK 335
                         79****************6..9*************************************************.********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.41E-40121259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-40121245IPR015300DNA-binding pseudobarrel domain
CDDcd100173.56E-19129230No hitNo description
PfamPF023624.5E-21130230IPR003340B3 DNA binding domain
SMARTSM010192.7E-21130232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702130232IPR003340B3 DNA binding domain
PfamPF065073.8E-31256335IPR010525Auxin response factor
PfamPF023096.9E-8444498IPR033389AUX/IAA domain
SuperFamilySSF542771.11E-12458538No hitNo description
PROSITE profilePS5174527.275462554IPR000270PB1 domain
PfamPF023092.1E-6508552IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MANVQVNPRG SSIAHSESGS SDDDLYAELW KLCAGPLVEI PRNHERVFYF PQGHMEQLEA  60
STNQELNNQA PLFNLPSKIL CRVIHVQLLA ELETDDVYAQ ITLQPEADQS EPTSPDPCPA  120
EAPKRTVNSF CKILTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL AAKDLHGYEW  180
RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGARR LARQQTTMPS  240
SVISSQSMHL GVLATAAHAV TTQTLFVVYY KPRTSQFIIG VNKYLEAIKN GFSVGMRFKM  300
RFEGEDTPDR RFTGTIVGVG DFSPHWSESK WRTLKIQWDE PATIQRPERV SPWEIEPFAP  360
SASINLVQPA VKNKRPRPVD IPVSEITTNS AGSTFWGRGS TQSHELTQVG STPEIQSSES  420
QVMWAASHID QNPETAKQKH VAAEASSKEM QAKQGASTTS TRSRTKVQMQ GIAVGRAVDL  480
TVLKGYDDLI NEVEKMFDIK GELRPSGKWS VVFTDDEGDM MLVGDDPWMD FCKMVRKIFI  540
YSSEEVKKIS PRCKFAVSSL EGEGTAVTID SEHKSET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1751935813355Auxin response factor 1
4ldw_A1e-1751935813355Auxin response factor 1
4ldw_B1e-1751935813355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373377KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605532.10.0PREDICTED: auxin response factor 11 isoform X2
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLA0A0D2PZC90.0A0A0D2PZC9_GOSRA; Auxin response factor
STRINGGorai.001G153900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]