PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G150000.6
Common NameB456_001G150000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 312aa    MW: 35964.8 Da    PI: 4.4778
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G150000.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1324.2e-4161302128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           GfrF P dee+++++Lkkk+ g++ ++ + i+evd++k+ePw+Lp +  v+++  ew+fF k +k ++  +++ r+t++gyWk+tg d+
  Gorai.001G150000.6   6 EIGFRFLPPDEEIISFFLKKKMMGDHKTT-RYIREVDLLKHEPWQLPaMsVVQSTYPEWFFFYKLSKISQ--RKNDRSTNDGYWKSTGADR 93 
                         68***********************9777.89***************5334555555*******999765..58889************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ +++l+g+kktLvfykgr+p+g +tdWvmhe+r+
  Gorai.001G150000.6  94 PITC-GDSLIGTKKTLVFYKGRTPNGLRTDWVMHEFRA 130
                         ****.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-434137IPR003441NAC domain
PROSITE profilePS5100543.6875166IPR003441NAC domain
PfamPF023651.0E-207129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDNVLEIGFR FLPPDEEIIS FFLKKKMMGD HKTTRYIREV DLLKHEPWQL PAMSVVQSTY  60
PEWFFFYKLS KISQRKNDRS TNDGYWKSTG ADRPITCGDS LIGTKKTLVF YKGRTPNGLR  120
TDWVMHEFRA TADSLPPNAD NSYVVGYLRG NAAEKNEYLI SNVYQQCTRF AASSSQDNAV  180
GATSMESNSA DFDIALRMYM EEEGMFDSDL SPSGGLHCFP SSSAIFNNDQ SRIEEERFSL  240
EDFDYLQSDD LFDDENEWQR QFVNTIDDEM EFYGALFHNP DERTNAEAEY RDNAWVKKHY  300
RVVTVGDFSN A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-29512915139Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472500.0KC847250.1 Gossypium hirsutum NAC domain protein NAC73 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480538.10.0PREDICTED: protein NTM1-like 9
TrEMBLA0A0D2LZ020.0A0A0D2LZ02_GOSRA; Uncharacterized protein
STRINGGorai.001G150000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.17e-43NAC transcription factor-like 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]