PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G148300.4
Common NameB456_001G148300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 458aa    MW: 49299 Da    PI: 9.6118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G148300.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.6e-16264311355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + hn  ErrRRd+iN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Gorai.001G148300.4 264 EVHNLSERRRRDKINKKMRALKELIPNC-----NKVDKASMLDEAIEYLKTLQ 311
                         57*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-20258318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-20258324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-18259315No hitNo description
PROSITE profilePS5088818.438261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-14264311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MELVWENGQV LIRGLSSKVT QKSSPFSSRS TANGSKDGGV ADSTFAHPIS GLSSLSKLDR  60
QGVDANIVPV NNFNRLKSSY VPKQLVEDEV PCSSLQQFKG SKEEKDRVNF SILRSNHASS  120
GAMSTPGLAA GAEDLQGNKV RSAPPMSSNI PFGNEGDFMA KRMRPTLPDS EPLKESFPDE  180
QSEAVPNTRL APDDTAFKGN PDQMVASSSL CSRGASNCPT YTFKRRYEDT DLSKNTTMEE  240
AEGTTKAAPV PRGSKGAKRK RKTEVHNLSE RRRRDKINKK MRALKELIPN CNKVDKASML  300
DEAIEYLKTL QLQVQMMSIG NGVYMPPMMF PLPSAMQHIN AQHLGGYSPM ALGMGMRMQM  360
GLGCGAPPQF PTSLMTGAPA VPGNPEARFN MLGFPDQMLL RSMSHSPFLS SAASFTPQSV  420
QPPAAVVSQS AAPPAAQVDL LGGANPLSTS KDSYPTH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259273KRKTEVHNLSERRRR
2269274ERRRRD
3270275RRRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480192.10.0PREDICTED: transcription factor PIL1
RefseqXP_012480199.10.0PREDICTED: transcription factor PIL1
RefseqXP_012480208.10.0PREDICTED: transcription factor PIL1
TrEMBLA0A0D2PZ750.0A0A0D2PZ75_GOSRA; Uncharacterized protein
STRINGGorai.001G148300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-39phytochrome interacting factor 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]