PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G147900.1

Common Name

B456_001G147900, LOC105795181

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 529aa MW: 57217.6 Da PI: 7.1199

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G147900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.9	6.6e-31	276	334	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d++++++tYeg+Hnh+ Gorai.001G147900.1 276 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDKSILITTYEGNHNHP 334 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-33	260	336	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-28	268	336	IPR003657	WRKY domain
PROSITE profile	PS50811	29.964	270	336	IPR003657	WRKY domain
SMART	SM00774	1.6E-37	275	335	IPR003657	WRKY domain
Pfam	PF03106	4.8E-27	277	334	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MEKQHSRELT FLHSGDSLRQ NSGVADRTLD DSRDHVEPHI KEMDFFSSQY QSHDHHHHHH 60 HQEGNTNNNG SSSFIDSSVN IGLNLLSSSP GVSRATNEEK PKAQESALKM ELEKLNEENR 120 RLRSMLDQIT KNYNELQGQL LMALQKQAHR NQQDQKDAVN GMASTIMSVQ QFMDPRPSAA 180 LDVNEPSGSD DKTQELSASP ENTIEIVSKE YDHRMVQNMP GKQVSIEDGT DQTSQSWGSL 240 KSPKIDQSKN EDQVSEGPFR KARVSVRARS EAPLISDGCQ WRKYGQKMAK GNPCPRAYYR 300 CTMAVGCPVR KQVQRCADDK SILITTYEGN HNHPLPPAAT AMANTTSAAA AMLLSGSTKS 360 KDGLPTSAYY PSLPYASSMA TLSASAPFPT ITLDLTQGPN AVQLLRPPPS AASFPLPLHG 420 YPQLLGNPMF GPPKLSTASP AMQLGQRPAS MVETVTAAIA SDPNFTAALA AAISTIMGPP 480 RNQGNSSNNN DENNNSSNGV GAPALPGSPQ IQQSCTTFSS KACTNKPG*

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MEKQHSRELT FLHSGDSLRQ NSGVADRTLD DSRDHVEPHI KEMDFFSSQY QSHDHHHHHH  60
HQEGNTNNNG SSSFIDSSVN IGLNLLSSSP GVSRATNEEK PKAQESALKM ELEKLNEENR  120
RLRSMLDQIT KNYNELQGQL LMALQKQAHR NQQDQKDAVN GMASTIMSVQ QFMDPRPSAA  180
LDVNEPSGSD DKTQELSASP ENTIEIVSKE YDHRMVQNMP GKQVSIEDGT DQTSQSWGSL  240
KSPKIDQSKN EDQVSEGPFR KARVSVRARS EAPLISDGCQ WRKYGQKMAK GNPCPRAYYR  300
CTMAVGCPVR KQVQRCADDK SILITTYEGN HNHPLPPAAT AMANTTSAAA AMLLSGSTKS  360
KDGLPTSAYY PSLPYASSMA TLSASAPFPT ITLDLTQGPN AVQLLRPPPS AASFPLPLHG  420
YPQLLGNPMF GPPKLSTASP AMQLGQRPAS MVETVTAAIA SDPNFTAALA AAISTIMGPP  480
RNQGNSSNNN DENNNSSNGV GAPALPGSPQ IQQSCTTFSS KACTNKPG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-21	262	338	1	76	WRKY transcription factor 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00115	ampDAP	Transfer from AT4G01720	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669821	0.0	KF669821.1 Gossypium hirsutum WRKY transcription factor 6 (WRKY6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480151.1	0.0	PREDICTED: probable WRKY transcription factor 47
TrEMBL	A0A0D2PZ69	0.0	A0A0D2PZ69_GOSRA; Uncharacterized protein
STRING	Gorai.001G147900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7156	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	7e-67	WRKY family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G147900.1
Entrez Gene	105795181

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]