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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.001G134100.1 |
| Common Name | B456_001G134100 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
SRS |
| Protein Properties |
Length: 345aa MW: 35971.7 Da PI: 8.1319 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.001G134100.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 217.8 | 2.4e-67 | 132 | 292 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkls 92
s +++CqdCGnqakkdC+h+RCRtCCksrgfdC thv+stWvpaa+rrerq ++aa+++ a s+ +++ +k++r +++++++ +t++s
Gorai.001G134100.1 132 SSGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVRSTWVPAARRRERQLMTAAPTTACAGSSgSTSGAKKPRLV-TSQTTTTLHTSTS 221
56679***********************************************9999998888777466677777765.6667777777777 PP
DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
++++ ++l+tss lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+ee
Gorai.001G134100.1 222 NTTP-RSLDTSSshqdagfketLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVEE 292
7765.5666666689******************************************************997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MGMVGLRDFV VVAPASFNHH HHHHHHHAQD PIIGNDQING QNAATALGVG VGVFPLLTAS 60
PCLAPQNMED SDLVNNSGRN KLSGMQLWQN QTSPNYLKKQ SSTLDNNNSS MNLIQTSGGG 120
GMGGGSGGSG TSSGTTCQDC GNQAKKDCSH RRCRTCCKSR GFDCPTHVRS TWVPAARRRE 180
RQLMTAAPTT ACAGSSGSTS GAKKPRLVTS QTTTTLHTST SNTTPRSLDT SSSHQDAGFK 240
ETLPGQVRAP AVFKCVRVTA VEDGEDEYAY QAVVKIGGHV FKGFLYDQGV EERDGFPNIS 300
ELHLGGGSGT NGGSSSSPVL DPSQVYAATG GGLLGGSTYG NPIN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 2e-82 | Lateral root primordium (LRP) protein-related |
