PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 316aa MW: 34991.2 Da PI: 7.1768

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G133100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00066	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F++ L Hir H Gorai.001G133100.1 33 HICSVCSKGFTSGKALGGHIRIH 55 68*******************99 PP
2	zf-C2H2	15.1	6.5e-05	92	113	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k F++ +L H+r+H Gorai.001G133100.1 92 SCCVCNKDFKSMKSLFGHMRNH 113 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	5.6E-8	33	57	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.056	33	55	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.62E-8	33	55	No hit	No description
PROSITE profile	PS50157	9.785	33	60	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.1E-4	33	56	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	35	55	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.62E-8	86	113	No hit	No description
SMART	SM00355	0.11	91	113	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.016	91	118	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.8E-5	93	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	93	113	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MEIETVSSES SDLTPSRPNK FPKLKGPKSC NQHICSVCSK GFTSGKALGG HIRIHMKGNN 60 LDLHSRASKE KKRISKNIDD DAVDVQAEDK VSCCVCNKDF KSMKSLFGHM RNHPNRTWRG 120 IRPPPLEKTS CCSTVSEEDE ALENDQVSFA RDENFVSSLP KRSNTAKRCW NSDEEEIFEA 180 AYSLMKLSRD SFGVGYQTKS SPTTIHETPS WGLPNKASLE GKGKLLAKEL NCDESAEIIE 240 NNSCFDQFHK FPVTISSSQN FGFYLKNPSG RPAVVEGKHL YSASEAGEGS YQVCSRKLLD 300 VDLNEPYVGV DYGLT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447698.1	0.0	PREDICTED: uncharacterized protein LOC105770880
TrEMBL	A0A0D2LYA4	0.0	A0A0D2LYA4_GOSRA; Uncharacterized protein
STRING	Gorai.001G133100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11455	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	5e-26	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G133100.1
Entrez Gene	105770880

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]