PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G125400.1
Common NameB456_001G125400, LOC105793022
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 694aa    MW: 76258.2 Da    PI: 7.2883
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G125400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-094194561954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Gorai.001G125400.1 419 FEHflHPYPKDSDKHMLAKQTGLTRNQVSNWFINARVR 456
                         554459******************************88 PP
2BELL110.87.7e-36281352172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +rqelq+kkakL+s+l+eV++rY+qy++q+q+v+ss e +ag g+ak+Yt lA+++iS++FrcLkd i++qi
  Gorai.001G125400.1 281 QRQELQMKKAKLVSMLDEVEQRYRQYRQQMQIVVSSLEKAAGFGAAKSYTGLASRTISKQFRCLKDSISDQI 352
                         69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.2E-54214350IPR006563POX domain
PfamPF075269.7E-46219349IPR006563POX domain
PROSITE profilePS5007112.05397460IPR001356Homeobox domain
SMARTSM003894.9E-9400464IPR001356Homeobox domain
CDDcd000864.29E-12400461No hitNo description
SuperFamilySSF466891.24E-16402467IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-29403466IPR009057Homeodomain-like
PfamPF059204.1E-18417456IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MATYFHGSSE FQAASVASPD GMQTLYLMNP NYIPYSDTNQ PFAATNLFFL NPAGNALNPS  60
SFPHTPPPNY HHLLGLPLPT PTASIVPANS NETHRPSSLH GIVSGVHYNS WGSSSTIDHQ  120
TSSASTYPQI VSTAVDNSAA RPHDVASQLR PVVVSPRQGL SLSLSSQQVP YSSSTVEADH  180
IQGQVPTMSP AAADEMRISG NSPSSASVVS NGIPGVQSVV LGSKYLRAAQ ELLDEVVNVG  240
KVIKPEVSEG TKEKIKADKE PVGSSAGEDG AQRGPELTTA QRQELQMKKA KLVSMLDEVE  300
QRYRQYRQQM QIVVSSLEKA AGFGAAKSYT GLASRTISKQ FRCLKDSISD QIKATSKSLG  360
EDDCLGVKLE GSRLRYVDYQ LRQQRALQQL GMIQHNNNVW RPQRGLPERA VSVLRAWLFE  420
HFLHPYPKDS DKHMLAKQTG LTRNQVSNWF INARVRLWKP MVEEMYLEEM KEHERKGGEE  480
NINKSEQKES GSTSSKSNAQ QQEMNASPTH QISNSTISTS PMEGSLMPPQ TSFNLIGSSE  540
LDNGVGVAQR ASKKSRNVND ELQNSPVEMK PGETWETNIN MIKLGDEERL LKHSFSYLSG  600
TTYTSMGEIG RFNEEQQLPP KFHGNSVSLT LGLPHCENLS LSRNPQNFLS NHNIQLGINT  660
PHASHSNAAG FDNIHEMQNR QRFAAQLLPD FVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16406464563Homeobox protein Meis2
3k2a_B3e-16406464563Homeobox protein Meis2
4xrm_A3e-16406464563Homeobox protein Meis2
4xrm_B3e-16406464563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5260251e-142HQ526025.1 Gossypium herbaceum clone NBRI_C_6055 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477409.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_012477417.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_012477428.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A0D2PQI40.0A0A0D2PQI4_GOSRA; Uncharacterized protein
STRINGGorai.001G125400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16274513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-99BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]