PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G121700.1
Common NameB456_001G121700, LOC105792623
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 360aa    MW: 40677.4 Da    PI: 8.8786
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G121700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05199218120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         + C++C+k+F+r  n++ H+
  Gorai.001G121700.1 199 FACSICSKTFNRYNNMQMHM 218
                         78*****************9 PP
2zf-C2H2163.5e-05283305123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk+F  k + ++H +++
  Gorai.001G121700.1 283 FMCRKCGKTFAVKGDWRTHEKNC 305
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-6168222No hitNo description
PfamPF139122.6E-4199218IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5199218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17199221IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741199226IPR007087Zinc finger, C2H2
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
SMARTSM00355190246278IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.08E-6269303No hitNo description
Gene3DG3DSA:3.30.160.609.6E-6279303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704283303IPR007087Zinc finger, C2H2
SMARTSM0035535283303IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MNMGFRSYHV AEDKTLCFQA PTFIEWLKPS SSSSPSSSPS SSSSSSTISS SYVAQHVQLI  60
NPMNIMKRPL ISFQQQQQQQ QYHDFHKHQV GEETIQCLPL LSRFTENKPL KEEALQKVMS  120
VGDVKEEKIE KVTVSLHIGL PNSSAAAAAE GDDNIPVVDH KILKEEEPMK KTFHGCSFNT  180
MSRFWIPTPA QILVGPMQFA CSICSKTFNR YNNMQMHMWG HGSEYRKGPD SLKGSQPAAM  240
LRLPCYCCAQ GCKNNINHPR AKPLKDFRTL QTHYKRKHGA KPFMCRKCGK TFAVKGDWRT  300
HEKNCGKLWY CTCGSDFKHK RSLKDHIRSF GKGHSPHPSL EGFEDDKECI TGSEDEFAH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476741.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-132ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0D2N8M10.0A0A0D2N8M1_GOSRA; Uncharacterized protein
STRINGGorai.001G121700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-126WIP domain protein 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]