PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G117100.1
Common NameB456_001G117100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 375aa    MW: 40375.2 Da    PI: 8.6394
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G117100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064207229123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C++sF++   L  H  +H
  Gorai.001G117100.1 207 YECKTCNRSFPSFQALGGHRASH 229
                         99**********99999998887 PP
2zf-C2H213.30.00025285307123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  Fs+   L  H+r+H
  Gorai.001G117100.1 285 HECSICGSEFSSGQALGGHMRRH 307
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.8E-13206231IPR007087Zinc finger, C2H2
SuperFamilySSF576674.62E-9206229No hitNo description
PROSITE profilePS5015710.72207234IPR007087Zinc finger, C2H2
SMARTSM003550.06207229IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
SuperFamilySSF576674.62E-9280307No hitNo description
Gene3DG3DSA:3.30.160.602.8E-4280307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-11285309IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014285312IPR007087Zinc finger, C2H2
SMARTSM003550.02285307IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280287307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MVGIFVTLAA KLCARKVKEA KSNILIQTPT TTLIILHYIR LLSLSPSFLI SLPLLLLSLV  60
RSLASNFLLF FLTLYTLLLA GAGVMDVQAH QEEFVGSNDH QALVIKGKRT KRQRPSSPFG  120
VTVTCSSSSA SIGGGGVAEE YNSISSPTTS GEVHESTEEE EDMANCLIML AQSDGPRKRM  180
DEGKFKVGSR KLSEIATTTN KAGFFVYECK TCNRSFPSFQ ALGGHRASHK KPKATMAEDK  240
KPLVLAVKDD KHVDQEPQSE TPLLALQVSN NNSKGCQVNK GNKIHECSIC GSEFSSGQAL  300
GGHMRRHRAA AATTASNQVV VSVGNGDGIK PRNILSLDLN LPAPEDDLRD SKFQFGAPQQ  360
AIVFSTPALV DCHY*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475836.10.0PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X45e-68ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A0D2N8F90.0A0A0D2N8F9_GOSRA; Uncharacterized protein
STRINGGorai.001G117100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-61C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]