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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G115200.1 | ||||||||
Common Name | B456_001G115200, LOC105791844 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 384aa MW: 42549.8 Da PI: 9.0603 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 143 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++F ++ L++H+ t H Gorai.001G115200.1 143 FPCTACGEVFQKPHFLEQHQATkH 166 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.827 | 143 | 171 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 145 | 166 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 7.39E-14 | 168 | 382 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 5.5E-6 | 316 | 382 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MAKPNFGSFF NKFLSLFILL LHLGCFIFTA KDHQKPPKKR KHSPLSPSSP SHKPHANKSL 60 SSTWSYLKRI FTSSKANCRN TIPTHPRAAL TPALTSARNS QQSLVSMVIP PETHLSETSL 120 PPPHPESDIS SDNPFSPLRN DIFPCTACGE VFQKPHFLEQ HQATKHAVSQ LLDGDSGKNI 180 VRIIFKTGWT DKVRNPEIHR ILKIHNSPKI LARFEEYREL VKAKAARNGA VVGRRDERCI 240 ADGNELLRFY CSTFMCDLGL NGSSGICSQQ YCSVCGIIKS GFSPKMDGIS TLSTSWRAHM 300 AVPEDVEEEF KFMNVKRAML VCRVVAGRVG SEGDETNKED GGFDSVIGRG GGNMAHHTKV 360 DEEELLVFNP RAVLPCFVIV YTV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 40 | KPPKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012475552.1 | 0.0 | PREDICTED: uncharacterized protein LOC105791844 | ||||
TrEMBL | A0A0D2LXH4 | 0.0 | A0A0D2LXH4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G115200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7919 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-122 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G115200.1 |
Entrez Gene | 105791844 |
Publications ? help Back to Top | |||
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