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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G112700.1 | ||||||||
Common Name | B456_001G112700, LOC105761873 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 182aa MW: 20070 Da PI: 6.8867 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00032 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ Fs+ L H++ H Gorai.001G112700.1 27 YDCTFCKRGFSNAQALGGHMNIH 49 88*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.41E-6 | 25 | 54 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 25 | 53 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.344 | 27 | 54 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051973 | Biological Process | positive regulation of telomerase activity | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
METDQPAPEN PDKASSDEQG ASPARSYDCT FCKRGFSNAQ ALGGHMNIHR RDKAKLKQPS 60 PTHETTATTQ QSNFDISKII PSYSHTPSSH GKWRWVLQDD GADARTDKTS DHIVGSQIRQ 120 LPLFDEKPSK SDQNPRSQVQ EGLEKGFSST QPPLGSELDL ELRLGPEPHD SSPPKTTKKF 180 F* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435280.1 | 1e-132 | PREDICTED: transcriptional regulator TAC1-like | ||||
TrEMBL | A0A0D2LXE8 | 1e-131 | A0A0D2LXE8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G112700.1 | 1e-132 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6991 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 6e-19 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G112700.1 |
Entrez Gene | 105761873 |
Publications ? help Back to Top | |||
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