PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G111500.1
Common NameB456_001G111500, LOC105791430
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 768aa    MW: 85265.6 Da    PI: 5.9275
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G111500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.22.6e-1163907601373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL+ cA+avs +d + a++l++++++++sp+gd  qRla++f+ AL+arla++++++y++l++++ts    ++ l+a++++  ++P++
  Gorai.001G111500.1 390 LRTLLILCAQAVSGDDGATAKELIKQIRQHSSPTGDGSQRLAQCFVDALEARLAGTGTHIYSSLAVKRTS---AADMLKAYQVYLSACPFM 477
                         5789***************************************************************999...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         k++ + aN++I + +e+++++H+iDf+i +G+QWpaL++ La+Rp+gpp+lRiTg++ p++g   +e+++etg+rLa+++e+ +vpfefn+
  Gorai.001G111500.1 478 KMAIFFANNTIFKVAEKATTLHVIDFGIFYGFQWPALIHCLANRPGGPPKLRITGIEFPRPGfrPAEAVQETGHRLARYCERYNVPFEFNA 568
                         *************************************************************9*9*************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          va+++e++++e+L++++++++aVn+ ++ ++llde+v l+s+rd vL+l+++++P+++v++  + ++n++ F++rf eal ++salfd+ 
  Gorai.001G111500.1 569 -VAQKWETIQTEDLKINSNDVIAVNCLFRFKNLLDETVVLNSPRDIVLNLIRKINPDIFVHSIVNGSYNAPFFVTRFREALFHFSALFDMS 658
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         e+++++e++ r+++E+++ g+ei+n+vaceg+er+er e +++W+ r  +aGF+++pl+ + +k+++  +++++   ++v+ +  ++++gW
  Gorai.001G111500.1 659 ETNISQEDNLRSMLEQKFYGQEIMNIVACEGTERVERPEAYKQWQVRSVRAGFTQLPLDPELMKKVRGKVKECYHSDFMVDVDGRWMLQGW 749
                         **************************************************************************777************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r +++ SaW
  Gorai.001G111500.1 750 KGRIIYASSAW 760
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.836364741IPR005202Transcription factor GRAS
PfamPF035148.9E-114390760IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MGSEVNSING FKFHNGFSMP YSNGYPKSEI SNGIISNDPS LDLSSVGAPF LPSLGLNNSS  60
TYASFFSTDK EGDSSSPSDD GDFSDTVLKY ISQVLLEEDM EEKPCLFHDS LALQAAEKSL  120
YEVLGESYPP RNRAPLCSGH SVESSPDDCS FRTSGDHSTY AGSSSNTSKS IDSRWNGDLG  180
ENNDKPSLFE ASVPDNFVFQ SSVNSFSQSS ARFQKVTASN GKGLVGSNSN ELAIPNYFSE  240
SELALHFKKG VEEASKFLPK GNQLTFDFKS NAWTAELNQK APVTVVEMES DWKEYSPHRL  300
TGKKNHDRED EDFEEGRNNK QSAVSGDESE LSDMFDKVLI CAGRNEKSPA CGADETPRNG  360
PSKLQPKEQT NGSGKARGKK QGKKKEVVDL RTLLILCAQA VSGDDGATAK ELIKQIRQHS  420
SPTGDGSQRL AQCFVDALEA RLAGTGTHIY SSLAVKRTSA ADMLKAYQVY LSACPFMKMA  480
IFFANNTIFK VAEKATTLHV IDFGIFYGFQ WPALIHCLAN RPGGPPKLRI TGIEFPRPGF  540
RPAEAVQETG HRLARYCERY NVPFEFNAVA QKWETIQTED LKINSNDVIA VNCLFRFKNL  600
LDETVVLNSP RDIVLNLIRK INPDIFVHSI VNGSYNAPFF VTRFREALFH FSALFDMSET  660
NISQEDNLRS MLEQKFYGQE IMNIVACEGT ERVERPEAYK QWQVRSVRAG FTQLPLDPEL  720
MKKVRGKVKE CYHSDFMVDV DGRWMLQGWK GRIIYASSAW VPASYPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-533727641382Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474953.10.0PREDICTED: scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0D2N8600.0A0A0D2N860_GOSRA; Uncharacterized protein
STRINGGorai.001G111500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]