PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G103300.1

Common Name

B456_001G103300, LOC105790653

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 519aa MW: 56552.3 Da PI: 7.3597

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G103300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.6e-09	325	372	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k Ka +L + ++Y++sLq Gorai.001G103300.1 325 SHSLAERVRREKISERMKLLQNLVPGC----NKVTGKALMLDEIINYVQSLQ 372 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.34E-10	319	376	No hit	No description
SuperFamily	SSF47459	7.33E-17	319	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.428	321	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	321	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-6	325	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-10	327	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MENQFFLGAQ GPPLDFGQSL SSPLSTAWQS LSSPMEIQAT ELNSTDYGLQ FESALSSMVS 60 SPVASNSNLS NESFMIRELI GKLGSIGGNS GEISPQPLIA NSTNTSCYST PLNSPPKLSL 120 PLNTLVKEKL PRLGKSMGMN ASVTDFSADP GFAERAAKFS CFGSRSFNGR TSQLGLNDTS 180 SPSPSLSPYR SNPLSSNRKI PRVSSSPSLN AMVIEPLQDR SELSHSQEES SITNGDPSLK 240 PSKGTNSRKR KTVPKAKTNE ISTSPSTNAP KGTESNEKRC KSTESNGNQN DSIKTEDDAK 300 GNTKPPEPPK DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQNLVPG CNKVTGKALM 360 LDEIINYVQS LQRQVEFLSM KLASVNTRLD FNMDGLMPKE MFESNNSLAH QIFPMDSSAT 420 AIFEQQNPAL HHHHANMSNG TMSQCLVGQL DTSIHPNLNT HLPQIHHFTP SMPQYPAFCE 480 GDLQTIVEMG LGQNQSREMA LQSEFQGSNQ VSQMKVEL*

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MENQFFLGAQ GPPLDFGQSL SSPLSTAWQS LSSPMEIQAT ELNSTDYGLQ FESALSSMVS  60
SPVASNSNLS NESFMIRELI GKLGSIGGNS GEISPQPLIA NSTNTSCYST PLNSPPKLSL  120
PLNTLVKEKL PRLGKSMGMN ASVTDFSADP GFAERAAKFS CFGSRSFNGR TSQLGLNDTS  180
SPSPSLSPYR SNPLSSNRKI PRVSSSPSLN AMVIEPLQDR SELSHSQEES SITNGDPSLK  240
PSKGTNSRKR KTVPKAKTNE ISTSPSTNAP KGTESNEKRC KSTESNGNQN DSIKTEDDAK  300
GNTKPPEPPK DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQNLVPG CNKVTGKALM  360
LDEIINYVQS LQRQVEFLSM KLASVNTRLD FNMDGLMPKE MFESNNSLAH QIFPMDSSAT  420
AIFEQQNPAL HHHHANMSNG TMSQCLVGQL DTSIHPNLNT HLPQIHHFTP SMPQYPAFCE  480
GDLQTIVEMG LGQNQSREMA LQSEFQGSNQ VSQMKVEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	251	SRKRKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012473818.1	0.0	PREDICTED: transcription factor bHLH62-like
TrEMBL	A0A0D2PPK7	0.0	A0A0D2PPK7_GOSRA; Uncharacterized protein
STRING	Gorai.001G103300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-105	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G103300.1
Entrez Gene	105790653

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]