PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G089400.1
Common NameB456_001G089400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 549aa    MW: 60078.1 Da    PI: 4.8465
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G089400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.14.3e-1391715331374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv++L++cAeav++++l+la+al++++  las++  +m+++a+yf+eALa+r++r       ++pp + ++ +  ++   +  f+e++P+l
  Gorai.001G089400.1 171 LVHTLMACAEAVQQDNLKLADALVKHIGLLASSQTGAMRKVATYFAEALARRIYR-------IFPPDSLDP-SYNDK--LQIPFYETCPYL 251
                         689***************************************************9.......566666653.23333..3335******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf+h+taNqaIlea++ ++rvH+iDf+++qG+QWpaL+qaLa R +gpp +R+Tg+g+p+++++++l+++g++La++Ae++g++fef+ +v
  Gorai.001G089400.1 252 KFAHFTANQAILEAFSMASRVHVIDFGLKQGMQWPALMQALALRHGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAERIGIEFEFRGFV 342
                         ******************************************************************************************* PP

                GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         a++l+dle+e+L+++p   E++aVn v++lh ll++++ +e+    v++ +k ++Pk+v+vveqea+hn++ Fl+rf+eal+yys+lfdsl
  Gorai.001G089400.1 343 ANSLADLEPEMLDIRPpeIEVVAVNAVFELHPLLARPGGIEK----VVSSIKAMKPKIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSL 429
                         ****************9899*********************9....********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                         e +  +  +++  +++ +lgr+i+nvvaceg +r+erhe l +Wr r+e+aGF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lg
  Gorai.001G089400.1 430 EGSGVAPPSQDLAMSELYLGRQICNVVACEGMDRVERHEPLTQWRTRMETAGFSPVHLGSNAYKQASMLLALFAsGDGYRVEENNGCLMLG 520
                         777666667889999999************************************************************************* PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W++rpL+++SaWr
  Gorai.001G089400.1 521 WHTRPLIATSAWR 533
                         ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.3E-3137109No hitNo description
PfamPF120412.9E-3137102IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098568.982145512IPR005202Transcription factor GRAS
PfamPF035141.5E-136171533IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0090378Biological Processseed trichome elongation
GO:2000273Biological Processpositive regulation of receptor activity
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MKRDHQEISG SGSKPAESSS IKGKLWEEDP DAGGMDDELL AVLGYKVRSS DMADVAQKLE  60
MLEKVMGTAQ EDGISQLGDT VHFNPSDLSG WVQNLLIEFN GPTTTPDPNF NDDSEYDLRA  120
IPGVAAYPPV KSDPGLENTR KRAKTESSSS SSSTTTRPVV LIDSQETGVR LVHTLMACAE  180
AVQQDNLKLA DALVKHIGLL ASSQTGAMRK VATYFAEALA RRIYRIFPPD SLDPSYNDKL  240
QIPFYETCPY LKFAHFTANQ AILEAFSMAS RVHVIDFGLK QGMQWPALMQ ALALRHGGPP  300
AFRLTGIGPP QPDNTDALQQ VGWKLAQLAE RIGIEFEFRG FVANSLADLE PEMLDIRPPE  360
IEVVAVNAVF ELHPLLARPG GIEKVVSSIK AMKPKIVTVV EQEANHNGPV FLDRFTEALH  420
YYSTLFDSLE GSGVAPPSQD LAMSELYLGR QICNVVACEG MDRVERHEPL TQWRTRMETA  480
GFSPVHLGSN AYKQASMLLA LFASGDGYRV EENNGCLMLG WHTRPLIATS AWRLAGTESG  540
SELTQELS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-7016653214378Protein SCARECROW
5b3h_A8e-7016653213377Protein SCARECROW
5b3h_D8e-7016653213377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.20370.0flower|seedling| flowering
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2089920.0AY208992.1 Gossypium hirsutum GIA/RGA-like gibberellin response modulator (GAI) mRNA, GAI-Dwarf8 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744906.10.0PREDICTED: DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A0D2N7E80.0A0A0D2N7E8_GOSRA; Uncharacterized protein
STRINGGorai.001G089400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]