PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G078500.2

Common Name

B456_001G078500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 367aa MW: 39711.8 Da PI: 8.8712

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G078500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.2	1.1e-16	163	210	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++hn Er+RRdriN+++ L++l+P+a K +Ka++L +++eY+k+Lq Gorai.001G078500.2 163 ATHNLSERKRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 210 69***********************9.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-19	158	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.076	160	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-14	163	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.14E-17	164	214	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-19	164	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-17	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MHGFSGFLPT APTKPTCRSN DTLESIVHQA TYHNQDETPA NTSSIAASSG GNRSESSSRL 60 PPVSVAARLT KKRAQPTSDS DQCRKHNISC GIQKDKADRS ECGCDTFYKI DNDATMVTWG 120 SHDESLQSLK TKTTDGDSGC HDGSESRDET GRSHPTRRSR AAATHNLSER KRRDRINQKM 180 KALQKLVPNA SKTDKASMLD EVIEYLKQLQ AQVQVMSMRS IPPMMMMPLG LQHHQHLQMS 240 LLGRIMAGMG VNHALGMGMG LVDINAATPP NASQSLPPLL HLPPPFLATA LPPMIPSRAT 300 ATAAAQSNPN ASSSDSIPLP DPSCAFLTQS MNMELYSKMA ALYQAQMNRT TETASSPSRS 360 NNIKQD*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MHGFSGFLPT APTKPTCRSN DTLESIVHQA TYHNQDETPA NTSSIAASSG GNRSESSSRL  60
PPVSVAARLT KKRAQPTSDS DQCRKHNISC GIQKDKADRS ECGCDTFYKI DNDATMVTWG  120
SHDESLQSLK TKTTDGDSGC HDGSESRDET GRSHPTRRSR AAATHNLSER KRRDRINQKM  180
KALQKLVPNA SKTDKASMLD EVIEYLKQLQ AQVQVMSMRS IPPMMMMPLG LQHHQHLQMS  240
LLGRIMAGMG VNHALGMGMG LVDINAATPP NASQSLPPLL HLPPPFLATA LPPMIPSRAT  300
ATAAAQSNPN ASSSDSIPLP DPSCAFLTQS MNMELYSKMA ALYQAQMNRT TETASSPSRS  360
NNIKQD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	173	ERKRRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX580414	7e-66	JX580414.1 Gossypium hirsutum clone NBRI_GE12836 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470587.1	0.0	PREDICTED: transcription factor UNE10-like
TrEMBL	A0A0D2LW15	0.0	A0A0D2LW15_GOSRA; Uncharacterized protein
STRING	Gorai.001G078500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	5e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G078500.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]