PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G078500.1
Common NameB456_001G078500, LOC105788306
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 432aa    MW: 47501.5 Da    PI: 8.7972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G078500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.91.3e-16228275355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++hn  Er+RRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Gorai.001G078500.1 228 ATHNLSERKRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 275
                         69*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-19223286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.076225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-14228275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-19229283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-16229279No hitNo description
SMARTSM003531.2E-17231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSHCIVPNWN LKNQRRRRQQ VEDEEETKRS SFHMFNPCNN INQQLVPVSN HQVAELTWQY  60
GQQLAMHGFS GFLPTAPTKP TCRSNDTLES IVHQATYHNQ DETPANTSSI AASSGGNRSE  120
SSSRLPPVSV AARLTKKRAQ PTSDSDQCRK HNISCGIQKD KADRSECGCD TFYKIDNDAT  180
MVTWGSHDES LQSLKTKTTD GDSGCHDGSE SRDETGRSHP TRRSRAAATH NLSERKRRDR  240
INQKMKALQK LVPNASKTDK ASMLDEVIEY LKQLQAQVQV MSMRSIPPMM MMPLGLQHHQ  300
HLQMSLLGRI MAGMGVNHAL GMGMGLVDIN AATPPNASQS LPPLLHLPPP FLATALPPMI  360
PSRATATAAA QSNPNASSSD SIPLPDPSCA FLTQSMNMEL YSKMAALYQA QMNRTTETAS  420
SPSRSNNIKQ D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12633TKRSSFHM
2233238ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5804148e-66JX580414.1 Gossypium hirsutum clone NBRI_GE12836 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470587.10.0PREDICTED: transcription factor UNE10-like
TrEMBLA0A0D2PVV30.0A0A0D2PVV3_GOSRA; Uncharacterized protein
STRINGGorai.001G078500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-36bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]