|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Gorai.001G075800.1 |
Common Name | B456_001G075800, LOC105788039 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
Family |
MIKC_MADS |
Protein Properties |
Length: 250aa MW: 29163.1 Da PI: 9.6743 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.001G075800.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 96.8 | 9.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eyss
Gorai.001G075800.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSS 59
79***********************************************96 PP
|
2 | K-box | 107 | 2.2e-35 | 75 | 174 | 1 | 100 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91
y++++ ++e++ + s++ e+akLk+++e Lqr+qRh++GedLe+Lsl+eLq+Le+qL+++lk+iRs+Kn+l++e+i+elqkk k+lqe+n
Gorai.001G075800.1 75 YAERQLAANENERTGSWTLEHAKLKARMEVLQRNQRHYMGEDLENLSLRELQNLEHQLDSALKHIRSRKNQLMFESISELQKKDKALQEQN 165
5667778889999****************************************************************************** PP
K-box 92 kaLrkklee 100
+ L kk++e
Gorai.001G075800.1 166 NVLAKKVKE 174
******986 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 32.548 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.92E-42 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 1.28E-34 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.6E-29 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.994 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
GO:0010154 | Biological Process | fruit development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSSD 60 SCMERILERY ERYSYAERQL AANENERTGS WTLEHAKLKA RMEVLQRNQR HYMGEDLENL 120 SLRELQNLEH QLDSALKHIR SRKNQLMFES ISELQKKDKA LQEQNNVLAK KVKEKEKEKE 180 KEKEKEMTHQ PQQNNCQDSS SMLPQPLQSL NISDTYEARS NGREEGNPSA AQHRNSNVLL 240 PPWMIPRIE*
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6byy_A | 2e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6c9l_A | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of tuberization. {ECO:0000269|PubMed:8756601}. |
Uniprot | TISSUE SPECIFICITY: Abundant in vegetative organs. {ECO:0000269|PubMed:8543185}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | JQ682641 | 0.0 | JQ682641.1 Gossypium hirsutum SQUA-like protein (MADS22) mRNA, complete cds. |