PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G074200.3

Common Name

B456_001G074200, LOC105787862

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 366aa MW: 41707.2 Da PI: 6.8254

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G074200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.7	7.4e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gilKKA+ELS+LCd+ + +++fs+tgk Gorai.001G074200.3 9 KRLESYSNRQVTYSKRRTGILKKAKELSILCDIHIILLMFSPTGK 53 689****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-30	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.077	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.01E-26	2	82	No hit	No description
SuperFamily	SSF55455	2.35E-25	2	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-20	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFHGE 60 RSNIEEVIVK FAQLTPQERA KRKLESLEAL KKTFMKLDHD LNIHDFLGAN SQSIEEMTKE 120 VSRFRAQLAE VHKRLSYWSN PDKIDNIEHL RQMEDSLRES IERVRIHKEN FGKHHLMSLE 180 CCNQFQNRIP LSVMIGAVQE AQPVMWLPNN ENHHTLLHNE LNFLPHRDAE CSTDCSLAGY 240 SGFFGSGKQT EISSSGQVDN VVQECNALNE LGSNACLNLE PGEQYFYQPY SASNYQDDEK 300 LKTEMEVNLQ GNPVVNQVIS NFEIPRPMYN NGHQAWVLSS GPCGIAMFDG NSYHQTPSSG 360 QCHDL*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFHGE  60
RSNIEEVIVK FAQLTPQERA KRKLESLEAL KKTFMKLDHD LNIHDFLGAN SQSIEEMTKE  120
VSRFRAQLAE VHKRLSYWSN PDKIDNIEHL RQMEDSLRES IERVRIHKEN FGKHHLMSLE  180
CCNQFQNRIP LSVMIGAVQE AQPVMWLPNN ENHHTLLHNE LNFLPHRDAE CSTDCSLAGY  240
SGFFGSGKQT EISSSGQVDN VVQECNALNE LGSNACLNLE PGEQYFYQPY SASNYQDDEK  300
LKTEMEVNLQ GNPVVNQVIS NFEIPRPMYN NGHQAWVLSS GPCGIAMFDG NSYHQTPSSG  360
QCHDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_A	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM236449	0.0	HM236449.1 UNVERIFIED: Gossypium hirsutum MADS33-like mRNA, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469941.1	0.0	PREDICTED: MADS-box transcription factor 57-like isoform X4
Swissprot	Q7X9I0	1e-105	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A0D2N6M0	0.0	A0A0D2N6M0_GOSRA; Uncharacterized protein
STRING	Gorai.001G074200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	5e-99	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Gorai.001G074200.3
Entrez Gene	105787862

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]