![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.001G074200.1 | ||||||||
Common Name | B456_001G074200, LOC105787862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 366aa MW: 41707.2 Da PI: 6.8254 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.7 | 7.4e-24 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gilKKA+ELS+LCd+ + +++fs+tgk Gorai.001G074200.1 9 KRLESYSNRQVTYSKRRTGILKKAKELSILCDIHIILLMFSPTGK 53 689****************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.077 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.01E-26 | 2 | 82 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-25 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-20 | 11 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 366 aa Download sequence Send to blast |
MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFHGE 60 RSNIEEVIVK FAQLTPQERA KRKLESLEAL KKTFMKLDHD LNIHDFLGAN SQSIEEMTKE 120 VSRFRAQLAE VHKRLSYWSN PDKIDNIEHL RQMEDSLRES IERVRIHKEN FGKHHLMSLE 180 CCNQFQNRIP LSVMIGAVQE AQPVMWLPNN ENHHTLLHNE LNFLPHRDAE CSTDCSLAGY 240 SGFFGSGKQT EISSSGQVDN VVQECNALNE LGSNACLNLE PGEQYFYQPY SASNYQDDEK 300 LKTEMEVNLQ GNPVVNQVIS NFEIPRPMYN NGHQAWVLSS GPCGIAMFDG NSYHQTPSSG 360 QCHDL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HM236449 | 0.0 | HM236449.1 UNVERIFIED: Gossypium hirsutum MADS33-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469941.1 | 0.0 | PREDICTED: MADS-box transcription factor 57-like isoform X4 | ||||
Swissprot | Q7X9I0 | 1e-105 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A0D2N6M0 | 0.0 | A0A0D2N6M0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G074200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5933 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18750.1 | 5e-99 | AGAMOUS-like 65 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.001G074200.1 |
Entrez Gene | 105787862 |
Publications ? help Back to Top | |||
---|---|---|---|
|