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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Gorai.001G072800.1 |
| Common Name | B456_001G072800, LOC105787709 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
C3H |
| Protein Properties |
Length: 296aa MW: 30833 Da PI: 9.5737 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.001G072800.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 17.8 | 6e-06 | 36 | 59 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
k ++C f+ t C++G++C+F H
Gorai.001G072800.1 36 KSKPCTKFFSTAGCQFGESCHFLH 59
7789******************** PP
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| 2 | zf-CCCH | 25.6 | 2.2e-08 | 100 | 125 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ f+ Ck+Gd+C+FaHg+
Gorai.001G072800.1 100 KTRLCNKFSSPEGCKFGDKCHFAHGE 125
8***********************96 PP
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| 3 | zf-CCCH | 38.2 | 2.4e-12 | 262 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC++fa+ G C +G+rC+FaHg
Gorai.001G072800.1 262 YKTKLCDNFAK-GSCTFGERCHFAHG 286
9**********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 1.8 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.108 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-5 | 35 | 61 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.5E-7 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 0.43 | 42 | 59 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 1.3E-13 | 97 | 129 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.582 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0053 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.02E-8 | 98 | 129 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.0E-6 | 100 | 125 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 7.31E-15 | 162 | 238 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 1.1E-12 | 167 | 237 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.655 | 168 | 232 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 1.3E-16 | 168 | 237 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 8.42E-15 | 170 | 232 | No hit | No description |
| Pfam | PF00013 | 6.8E-12 | 170 | 234 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 2.3E-16 | 257 | 292 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.94E-9 | 260 | 291 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.0E-8 | 261 | 287 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.558 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.1E-9 | 262 | 286 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MDTRKRGRRE AGFNANGGIK KSKPELESLS TGVGSKSKPC TKFFSTAGCQ FGESCHFLHY 60
VPGGYNAVSQ MMNLAPAVQP ASRNVAATAA IPHGSASAVK TRLCNKFSSP EGCKFGDKCH 120
FAHGEWELGT PIAPSLDDPR SMAPLPGRMG SRMEPPPPSG PAATFGASAT AKISVDASLA 180
GAIIGKGGVH SKQICRQTGA KLSIREHESD PSLRNIELEG SFEQIKEASA MVRELISSLG 240
PVPGPAKTAG AHGGQGHPGS NYKTKLCDNF AKGSCTFGER CHFAHGAAEL RKSVV*
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