PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G054900.1

Common Name

B456_001G054900, LOC105785796

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 294aa MW: 32800 Da PI: 8.9723

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G054900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.6e-11	131	178	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++e+L++l+P + +k Ka iL + ++Y++sL+ Gorai.001G054900.1 131 SHSLAERVRRKKISERMEKLQRLVPGC----DKITGKALILDEIINYVQSLE 178 8***********************9....899*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-17	125	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.74E-11	125	182	No hit	No description
PROSITE profile	PS50888	15.974	127	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-17	127	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.9E-9	131	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-9	133	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MASFSTKSNP FLIDSIFSPH KISGFVEEIE NLNFDQVYSE NNEPSGSIFK EQSSTGEFTV 60 VDDNVALTSK KRRAKNGVKD EKEGKPKKQK KGNDEKKAYK GSKKDRKKGG EEPPNGRYIH 120 VRARRGQATD SHSLAERVRR KKISERMEKL QRLVPGCDKI TGKALILDEI INYVQSLESQ 180 VEFLSMKIAT LNPMFYDLGV DPESFMVKPE MVNNISSPPQ CYPTQPITTT AAAIGTAATF 240 TPTNNIPLLD TSAAFLFHQG ETSAVFSQFQ DNGSVLWEVE GSRQEFLNPF RSF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	74	KKRRAK
2	85	103	PKKQKKGNDEKKAYKGSKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467415.1	0.0	PREDICTED: transcription factor bHLH137 isoform X1
TrEMBL	A0A0D2N5U5	0.0	A0A0D2N5U5_GOSRA; Uncharacterized protein
STRING	Gorai.001G054900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8796	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	2e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G054900.1
Entrez Gene	105785796

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]